Wall clock time and date at job start Tue Mar 31 2020 10:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00335 * 2 1 4 4 C 1.53000 * 109.47186 * 293.95361 * 3 2 1 5 5 C 1.53001 * 109.47355 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00563 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.46898 * 111.00045 * 123.95688 * 2 1 3 15 15 C 1.53008 * 109.47407 * 66.04148 * 14 2 1 16 16 H 1.09003 * 110.62701 * 308.11021 * 15 14 2 17 17 C 1.55135 * 110.70356 * 71.40089 * 15 14 2 18 18 C 1.54912 * 101.65096 * 154.03806 * 17 15 14 19 19 N 1.47840 * 104.79700 * 322.93076 * 18 17 15 20 20 C 1.46898 * 110.99945 * 146.36390 * 19 18 17 21 21 C 1.50695 * 109.47143 * 69.15750 * 20 19 18 22 22 C 1.38234 * 119.99792 * 269.72444 * 21 20 19 23 23 C 1.38238 * 119.99440 * 179.76656 * 22 21 20 24 24 C 1.38228 * 120.00454 * 0.50688 * 23 22 21 25 25 C 1.38236 * 119.99896 * 359.74725 * 24 23 22 26 26 C 1.38234 * 119.99948 * 359.97438 * 25 24 23 27 27 C 1.47445 * 108.56510 * 24.09454 * 19 18 17 28 28 H 1.08996 * 109.46680 * 59.99711 * 1 2 3 29 29 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46177 * 300.00264 * 1 2 3 31 31 H 1.09002 * 109.47091 * 173.95726 * 3 2 1 32 32 H 1.08992 * 109.47497 * 53.95617 * 3 2 1 33 33 H 1.09002 * 109.46807 * 60.00192 * 4 3 2 34 34 H 1.08998 * 109.47285 * 299.99794 * 4 3 2 35 35 H 1.09007 * 109.46922 * 59.99890 * 5 4 3 36 36 H 1.09003 * 109.46836 * 300.00646 * 5 4 3 37 37 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47476 * 186.03971 * 14 2 1 39 39 H 1.09002 * 109.47492 * 306.04358 * 14 2 1 40 40 H 1.08998 * 110.99373 * 272.13201 * 17 15 14 41 41 H 1.09004 * 110.99514 * 35.94530 * 17 15 14 42 42 H 1.09005 * 110.37043 * 204.10138 * 18 17 15 43 43 H 1.09000 * 110.46331 * 81.81237 * 18 17 15 44 44 H 1.09007 * 109.46907 * 189.15645 * 20 19 18 45 45 H 1.08996 * 109.47010 * 309.15612 * 20 19 18 46 46 H 1.07996 * 120.00199 * 359.97438 * 22 21 20 47 47 H 1.08007 * 119.99390 * 180.23081 * 23 22 21 48 48 H 1.08007 * 120.00239 * 179.72091 * 24 23 22 49 49 H 1.08003 * 120.00263 * 179.97438 * 25 24 23 50 50 H 1.07997 * 120.00036 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.88516 * 239.60355 * 27 19 18 52 52 H 1.09003 * 110.02064 * 118.49760 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1794 3.4859 -1.3180 6 6 1.8204 4.1618 -2.6162 7 1 1.2574 3.6263 -3.3663 8 6 2.2107 5.4641 -2.8464 9 7 2.8958 6.1165 -1.9328 10 14 1.7662 6.3016 -4.4559 11 1 2.8430 6.0652 -5.4508 12 1 0.4884 5.7444 -4.9675 13 1 1.6140 7.7612 -4.2287 14 6 1.9955 -0.7660 1.1375 15 6 1.6314 -2.2427 0.9703 16 1 0.5629 -2.3564 0.7870 17 6 2.4594 -2.8857 -0.1732 18 6 2.4772 -4.3750 0.2526 19 7 2.5864 -4.3449 1.7267 20 6 1.8590 -5.4688 2.3314 21 6 2.5711 -6.7580 2.0121 22 6 2.2406 -7.4660 0.8718 23 6 2.8972 -8.6461 0.5765 24 6 3.8768 -9.1236 1.4268 25 6 4.2036 -8.4183 2.5700 26 6 3.5510 -7.2352 2.8623 27 6 2.0617 -3.0546 2.2100 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 3.0798 1.3442 0.1082 32 1 1.5613 1.9273 0.8309 33 1 0.5473 2.0845 -1.4264 34 1 2.0659 1.5015 -2.1492 35 1 3.2637 3.4592 -1.2096 36 1 1.7448 4.0416 -0.4871 37 1 3.1707 7.0325 -2.0950 38 1 3.0798 -0.6613 1.1755 39 1 1.5612 -0.3873 2.0628 40 1 1.9609 -2.7603 -1.1344 41 1 3.4690 -2.4758 -0.2025 42 1 3.3382 -4.8834 -0.1814 43 1 1.5537 -4.8688 -0.0496 44 1 1.8171 -5.3349 3.4124 45 1 0.8462 -5.5041 1.9301 46 1 1.4719 -7.0954 0.2099 47 1 2.6416 -9.1973 -0.3165 48 1 4.3866 -10.0480 1.1984 49 1 4.9686 -8.7915 3.2346 50 1 3.8060 -6.6844 3.7556 51 1 2.8398 -2.5180 2.7530 52 1 1.2033 -3.2210 2.8608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076110142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:31 Heat of formation + Delta-G solvation = 2.254513 kcal Electronic energy + Delta-G solvation = -25518.719668 eV Core-core repulsion = 22095.449468 eV Total energy + Delta-G solvation = -3423.270200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75526 -39.69789 -38.39781 -35.78915 -34.42878 -33.12840 -31.75565 -31.23593 -30.35977 -28.70047 -27.73266 -26.41768 -25.08996 -23.50669 -22.97894 -22.47365 -21.58986 -21.37854 -20.89545 -18.47436 -17.79604 -17.15852 -16.67641 -16.57108 -16.51256 -16.17534 -15.99114 -15.73723 -15.16598 -14.96417 -14.67007 -14.37380 -14.28970 -14.17698 -14.05511 -13.69013 -13.59503 -13.29473 -13.18698 -12.94948 -12.73958 -12.66240 -12.59901 -12.47749 -12.27885 -12.27191 -11.98529 -11.79922 -11.72161 -11.66838 -11.46282 -11.37225 -11.31783 -11.00966 -10.54764 -9.76837 -9.67416 -9.23126 -9.22658 -8.19986 -6.30966 0.46625 0.55478 1.39782 1.41414 1.52489 2.40893 2.78784 2.96086 3.12955 3.25573 3.70509 3.72061 3.91660 3.98220 4.01385 4.17795 4.20728 4.26579 4.29298 4.33896 4.41887 4.46744 4.49793 4.50468 4.62148 4.66315 4.68989 4.73603 4.74058 4.80022 4.81608 4.85318 5.00130 5.02305 5.06696 5.10018 5.13619 5.17108 5.21564 5.24133 5.27538 5.42404 5.52739 5.60506 5.66988 5.73414 5.74969 5.86234 6.00855 6.10076 6.11168 6.18193 6.21953 6.28607 6.85777 7.38100 8.91865 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.001745 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.925981 B =16042.739503 C =16309.103022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.068 3.932 4 C -0.088 4.088 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.272 1.272 12 H -0.263 1.263 13 H -0.281 1.281 14 C 0.068 3.932 15 C -0.095 4.095 16 H 0.081 0.919 17 C -0.109 4.109 18 C 0.050 3.950 19 N -0.533 5.533 20 C 0.090 3.910 21 C -0.087 4.087 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.114 4.114 27 C 0.051 3.949 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.050 0.950 34 H 0.050 0.950 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.127 0.873 51 H 0.076 0.924 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -31.453 10.472 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.060 4.060 4 C -0.126 4.126 5 C -0.013 4.013 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.198 1.198 12 H -0.188 1.188 13 H -0.206 1.206 14 C -0.060 4.060 15 C -0.115 4.115 16 H 0.099 0.901 17 C -0.147 4.147 18 C -0.078 4.078 19 N -0.257 5.257 20 C -0.037 4.037 21 C -0.087 4.087 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.077 4.077 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.142 0.858 47 H 0.153 0.847 48 H 0.156 0.844 49 H 0.154 0.846 50 H 0.145 0.855 51 H 0.095 0.905 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.721 -31.575 10.250 33.241 hybrid contribution -1.008 1.428 -0.174 1.756 sum -2.728 -30.147 10.075 31.903 Atomic orbital electron populations 1.22468 0.87165 1.02355 1.00572 1.61971 1.08429 1.13119 1.43362 1.22012 0.99393 0.87784 0.96770 1.21377 0.99723 0.95158 0.96328 1.18984 0.94657 0.92286 0.95365 1.21690 1.34967 0.98341 1.03075 0.92310 1.26000 0.94971 0.98293 1.00668 1.70101 1.39326 1.11771 1.36138 0.85437 0.79022 0.77402 0.79121 1.19760 1.18766 1.20646 1.22098 0.99949 0.92908 0.91076 1.22319 1.00242 0.93368 0.95573 0.90053 1.22573 1.00101 0.93783 0.98261 1.23015 1.00563 0.96732 0.87455 1.63601 1.54134 1.01778 1.06155 1.21257 0.94207 0.87886 1.00351 1.19858 0.97534 0.95839 0.95504 1.21239 1.00532 0.95673 0.96793 1.21398 0.96723 0.96468 1.00241 1.21455 0.97923 1.00679 0.94831 1.21433 1.00191 0.95325 0.97910 1.21215 0.95741 0.96311 0.99944 1.22805 0.99185 0.89330 0.96365 0.92021 0.89755 0.95869 0.91676 0.95866 0.93159 0.93090 0.99051 0.99193 0.92789 0.91145 0.94590 0.90910 0.91909 0.91227 0.93012 0.89321 0.93409 0.85843 0.84653 0.84446 0.84559 0.85509 0.90547 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.14 127.69 1.17 1.73 16 2 N -0.54 -15.56 4.68 -922.47 -4.32 -19.88 16 3 C 0.07 2.41 4.96 86.30 0.43 2.84 16 4 C -0.09 -3.75 5.08 30.59 0.16 -3.59 16 5 C 0.02 1.34 4.97 29.85 0.15 1.49 16 6 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 7 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 10 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 C 0.07 1.57 4.25 86.31 0.37 1.94 16 15 C -0.10 -1.80 2.90 -9.61 -0.03 -1.83 16 16 H 0.08 1.48 6.24 -2.39 -0.01 1.46 16 17 C -0.11 -2.21 6.44 31.98 0.21 -2.00 16 18 C 0.05 0.89 5.62 86.78 0.49 1.38 16 19 N -0.53 -9.41 5.15 -890.11 -4.59 -14.00 16 20 C 0.09 1.35 4.73 85.56 0.40 1.75 16 21 C -0.09 -1.40 5.09 -19.87 -0.10 -1.50 16 22 C -0.12 -1.89 8.93 22.27 0.20 -1.69 16 23 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 24 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 25 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 27 C 0.05 0.85 6.45 86.64 0.56 1.41 16 28 H 0.06 1.73 6.47 -2.39 -0.02 1.71 16 29 H 0.08 1.73 6.18 -2.39 -0.01 1.72 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 32 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 33 H 0.05 2.09 6.55 -2.39 -0.02 2.07 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.07 1.72 7.79 -2.39 -0.02 1.70 16 39 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.45 7.94 -2.39 -0.02 1.43 16 42 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.05 0.84 7.00 -2.39 -0.02 0.82 16 44 H 0.09 1.17 7.98 -2.38 -0.02 1.15 16 45 H 0.05 0.67 7.79 -2.39 -0.02 0.65 16 46 H 0.12 1.63 7.50 -2.91 -0.02 1.61 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 49 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 50 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 51 H 0.08 1.35 7.82 -2.39 -0.02 1.33 16 52 H 0.07 0.94 7.56 -2.39 -0.02 0.93 16 Total: -1.00 -65.83 405.08 -0.17 -66.00 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.85 Total: 13.66 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 5.58 Total: -35.39 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -8.62 Total: -91.24 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.83 -0.17 -66.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076110142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.255 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds