Wall clock time and date at job start Tue Mar 31 2020 11:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 C 1.38420 * 119.98112 * 269.72991 * 13 10 9 15 15 F 1.35094 * 119.98982 * 0.02562 * 14 13 10 16 16 C 1.38601 * 120.01254 * 179.72385 * 14 13 10 17 17 F 1.35107 * 120.00272 * 180.25070 * 16 14 13 18 18 C 1.38568 * 119.98505 * 0.56888 * 16 14 13 19 19 F 1.35099 * 120.01732 * 179.68128 * 18 16 14 20 20 C 1.38569 * 119.96041 * 359.70610 * 18 16 14 21 21 F 1.35104 * 120.00725 * 179.97438 * 20 18 16 22 22 C 1.38411 * 119.98219 * 90.00196 * 13 10 9 23 23 F 1.35103 * 119.98957 * 359.97438 * 22 13 10 24 24 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 6 4.3170 -3.4097 1.6227 15 9 4.9008 -2.8528 0.5392 16 6 5.0047 -3.4738 2.8243 17 9 6.2594 -2.9802 2.9118 18 6 4.4077 -4.0501 3.9341 19 9 5.0799 -4.1186 5.1040 20 6 3.1211 -4.5564 3.8431 21 9 2.5383 -5.1190 4.9244 22 6 2.4324 -4.4861 2.6424 23 9 1.1778 -4.9792 2.5536 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568920.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:38 Heat of formation + Delta-G solvation = -253.949594 kcal Electronic energy + Delta-G solvation = -25167.866129 eV Core-core repulsion = 20303.268551 eV Total energy + Delta-G solvation = -4864.597578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.993 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.09347 -49.72767 -49.29659 -48.75375 -48.42549 -38.39825 -36.05604 -35.09734 -34.72989 -31.45247 -30.75661 -30.06498 -24.97128 -24.15685 -23.48289 -19.32928 -19.13550 -18.76764 -18.51524 -18.10379 -17.41310 -16.80985 -16.69942 -16.53878 -16.01199 -15.94826 -15.70053 -15.58758 -14.99531 -14.96292 -14.90945 -14.60027 -14.43991 -14.35876 -13.67109 -13.13963 -13.00204 -12.28084 -12.04247 -11.66554 -11.53973 -11.36419 -11.04332 -10.92151 -10.75700 -10.62388 -10.41911 -10.31447 -9.37358 -8.83441 -8.71496 -7.01499 -4.25176 0.02709 0.32541 1.22551 2.47996 2.80906 2.96328 3.01896 3.06744 3.40862 3.63088 3.71934 3.93315 4.03596 4.08743 4.47194 4.54018 4.70187 4.82223 4.95108 5.31128 5.56069 5.83745 6.29473 6.64661 6.97023 8.19675 8.25726 8.75275 10.09939 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.006774 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.046197 B = 4132.730854 C = 4746.949100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.030 3.970 3 Si 0.930 3.070 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.230 4.230 8 H 0.117 0.883 9 N -0.910 5.910 10 S 2.519 3.481 11 O -0.987 6.987 12 O -0.951 6.951 13 C -0.694 4.694 14 C 0.212 3.788 15 F -0.079 7.079 16 C 0.027 3.973 17 F -0.107 7.107 18 C 0.117 3.883 19 F -0.102 7.102 20 C 0.025 3.975 21 F -0.108 7.108 22 C 0.210 3.790 23 F -0.083 7.083 24 H 0.286 0.714 25 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -2.393 6.313 8.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.754 3.246 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.381 4.381 8 H 0.134 0.866 9 N -0.656 5.656 10 S 2.607 3.393 11 O -0.975 6.975 12 O -0.941 6.941 13 C -0.767 4.767 14 C 0.190 3.810 15 F -0.057 7.057 16 C 0.005 3.995 17 F -0.086 7.086 18 C 0.095 3.905 19 F -0.080 7.080 20 C 0.003 3.997 21 F -0.087 7.087 22 C 0.187 3.813 23 F -0.061 7.061 24 H 0.097 0.903 25 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.573 -3.277 5.827 8.704 hybrid contribution 0.281 0.973 1.231 1.594 sum 5.854 -2.304 7.058 9.455 Atomic orbital electron populations 1.69709 1.06492 1.29944 1.40989 1.25631 0.95875 1.00667 0.96182 0.85772 0.80178 0.79895 0.78743 1.18168 1.19594 1.19839 1.19982 0.93294 0.83061 1.41736 0.86555 1.52944 1.17713 1.20399 1.74587 1.12510 0.73515 0.75385 0.77851 1.93420 1.58604 1.58136 1.87327 1.93490 1.60460 1.86766 1.53339 1.32700 1.05706 1.09708 1.28549 1.16250 0.89252 0.93169 0.82371 1.91744 1.82821 1.80695 1.50415 1.17227 0.83238 1.06061 0.92987 1.91590 1.35243 1.85248 1.96476 1.16792 0.89761 1.01735 0.82251 1.91600 1.78916 1.93938 1.43515 1.17193 0.91795 1.05806 0.84946 1.91585 1.83244 1.82465 1.51358 1.16244 0.81046 0.93564 0.90400 1.91731 1.34528 1.83638 1.96195 0.90314 0.75238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.18 13.06 55.49 0.72 -18.46 15 2 C 0.03 0.67 5.50 -17.43 -0.10 0.58 15 3 Si 0.93 17.17 29.55 -169.99 -5.02 12.14 15 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 7 C -0.23 -5.18 9.63 -15.06 -0.15 -5.32 15 8 H 0.12 2.50 7.15 -52.49 -0.38 2.13 15 9 N -0.91 -20.12 5.75 31.50 0.18 -19.94 15 10 S 2.52 54.13 5.59 -107.50 -0.60 53.53 15 11 O -0.99 -22.71 16.19 -57.17 -0.93 -23.64 15 12 O -0.95 -22.27 15.89 -57.17 -0.91 -23.18 15 13 C -0.69 -13.02 5.90 -39.45 -0.23 -13.26 15 14 C 0.21 3.75 7.21 -39.38 -0.28 3.46 15 15 F -0.08 -1.49 14.57 2.25 0.03 -1.46 15 16 C 0.03 0.42 7.31 -39.33 -0.29 0.13 15 17 F -0.11 -1.62 17.09 2.25 0.04 -1.59 15 18 C 0.12 1.74 7.31 -39.34 -0.29 1.45 15 19 F -0.10 -1.42 17.09 2.25 0.04 -1.38 15 20 C 0.02 0.39 7.31 -39.33 -0.29 0.10 15 21 F -0.11 -1.63 17.09 2.25 0.04 -1.59 15 22 C 0.21 3.68 7.21 -39.39 -0.28 3.40 15 23 F -0.08 -1.55 15.25 2.25 0.03 -1.51 15 24 H 0.29 6.09 8.31 -40.82 -0.34 5.75 15 25 H 0.41 9.12 8.02 -34.47 -0.28 8.84 15 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -25.19 269.32 -4.00 -29.20 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 0.21 Total: 3.29 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.90 Total: -9.46 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.91 Total: -38.40 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -1.83 Total: -46.82 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.18 Total: -7.54 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.02 Total: 12.14 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.60 Total: 53.53 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -25.19 -4.00 -29.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568920.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.754 kcal (2) G-P(sol) polarization free energy of solvation -25.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds