Wall clock time and date at job start Tue Mar 31 2020 11:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 C 1.38420 * 119.98112 * 269.72991 * 13 10 9 15 15 F 1.35094 * 119.98982 * 0.02562 * 14 13 10 16 16 C 1.38601 * 120.01254 * 179.72385 * 14 13 10 17 17 F 1.35107 * 120.00272 * 180.25070 * 16 14 13 18 18 C 1.38568 * 119.98505 * 0.56888 * 16 14 13 19 19 F 1.35099 * 120.01732 * 179.68128 * 18 16 14 20 20 C 1.38569 * 119.96041 * 359.70610 * 18 16 14 21 21 F 1.35104 * 120.00725 * 179.97438 * 20 18 16 22 22 C 1.38411 * 119.98219 * 90.00196 * 13 10 9 23 23 F 1.35103 * 119.98957 * 359.97438 * 22 13 10 24 24 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 6 4.3170 -3.4097 1.6227 15 9 4.9008 -2.8528 0.5392 16 6 5.0047 -3.4738 2.8243 17 9 6.2594 -2.9802 2.9118 18 6 4.4077 -4.0501 3.9341 19 9 5.0799 -4.1186 5.1040 20 6 3.1211 -4.5564 3.8431 21 9 2.5383 -5.1190 4.9244 22 6 2.4324 -4.4861 2.6424 23 9 1.1778 -4.9792 2.5536 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090568920.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:36 Heat of formation + Delta-G solvation = -269.959549 kcal Electronic energy + Delta-G solvation = -25168.560373 eV Core-core repulsion = 20303.268551 eV Total energy + Delta-G solvation = -4865.291822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.993 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -51.38828 -51.11327 -50.70999 -50.14639 -49.74775 -39.82955 -37.95941 -36.71890 -36.64755 -33.08532 -32.21433 -31.46935 -26.62263 -25.60169 -24.88620 -20.89150 -20.58028 -20.21983 -20.12165 -19.66295 -18.83206 -18.33961 -18.05887 -18.02419 -17.40476 -17.38132 -17.28912 -16.99579 -16.59357 -16.34119 -16.26233 -16.09078 -15.83185 -15.76709 -15.37279 -14.56401 -14.47536 -13.89038 -13.41111 -13.22139 -13.09341 -12.96984 -12.94764 -12.82117 -12.35258 -12.27771 -12.02020 -11.88551 -10.77571 -10.35422 -10.20849 -8.57553 -5.98675 -1.38366 -1.06156 -0.51549 1.06304 1.42126 1.50509 1.52743 1.64220 1.99798 2.13056 2.27150 2.46471 2.56547 2.61934 2.77604 3.03654 3.18452 3.32352 3.44572 3.90608 3.96761 4.26894 4.90190 4.97019 5.38702 6.55923 6.66862 7.10101 8.57388 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.006774 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.046197 B = 4132.730854 C = 4746.949100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C -0.004 4.004 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.278 4.278 8 H 0.118 0.882 9 N -0.928 5.928 10 S 2.577 3.423 11 O -0.999 6.999 12 O -0.970 6.970 13 C -0.712 4.712 14 C 0.211 3.789 15 F -0.087 7.087 16 C 0.043 3.957 17 F -0.098 7.098 18 C 0.148 3.852 19 F -0.087 7.087 20 C 0.042 3.958 21 F -0.099 7.099 22 C 0.209 3.791 23 F -0.090 7.090 24 H 0.286 0.714 25 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -3.147 8.008 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.213 4.213 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.423 4.423 8 H 0.136 0.864 9 N -0.678 5.678 10 S 2.666 3.334 11 O -0.987 6.987 12 O -0.959 6.959 13 C -0.789 4.789 14 C 0.189 3.811 15 F -0.064 7.064 16 C 0.021 3.979 17 F -0.076 7.076 18 C 0.126 3.874 19 F -0.065 7.065 20 C 0.019 3.981 21 F -0.077 7.077 22 C 0.187 3.813 23 F -0.068 7.068 24 H 0.096 0.904 25 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.258 -3.956 7.498 11.161 hybrid contribution -0.032 0.803 0.904 1.209 sum 7.226 -3.154 8.402 11.522 Atomic orbital electron populations 1.69771 1.07500 1.30325 1.44620 1.26255 0.96438 1.02873 0.95697 0.84995 0.79224 0.76709 0.78542 1.17670 1.19756 1.19478 1.20013 0.93317 0.83376 1.45580 0.86432 1.52327 1.17336 1.20047 1.78066 1.09099 0.73027 0.74172 0.77085 1.93431 1.59378 1.58190 1.87729 1.93491 1.61155 1.86958 1.54330 1.32056 1.06945 1.12731 1.27192 1.16283 0.89007 0.92876 0.82946 1.91733 1.82843 1.80875 1.50998 1.16970 0.83286 1.05430 0.92232 1.91629 1.34622 1.85042 1.96344 1.16601 0.89035 0.99617 0.82191 1.91660 1.78533 1.93528 1.42731 1.16943 0.91614 1.05120 0.84376 1.91625 1.83161 1.82197 1.50734 1.16253 0.80776 0.93472 0.90817 1.91722 1.35059 1.83732 1.96264 0.90368 0.75442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.35 13.06 21.65 0.28 -42.07 15 2 C 0.00 -0.18 5.50 84.86 0.47 0.28 15 3 Si 0.98 35.72 29.55 68.60 2.03 37.75 15 4 H -0.25 -8.81 7.11 99.48 0.71 -8.10 15 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 6 H -0.27 -9.49 7.11 99.48 0.71 -8.78 15 7 C -0.28 -12.80 9.63 84.03 0.81 -11.99 15 8 H 0.12 5.16 7.15 -2.91 -0.02 5.13 15 9 N -0.93 -41.88 5.75 -54.26 -0.31 -42.20 15 10 S 2.58 109.54 5.59 -56.49 -0.32 109.23 15 11 O -1.00 -45.21 16.19 -128.00 -2.07 -47.29 15 12 O -0.97 -44.90 15.89 -128.00 -2.03 -46.94 15 13 C -0.71 -25.54 5.90 22.35 0.13 -25.41 15 14 C 0.21 7.00 7.21 22.40 0.16 7.16 15 15 F -0.09 -3.14 14.57 44.97 0.66 -2.49 15 16 C 0.04 1.20 7.31 22.44 0.16 1.36 15 17 F -0.10 -2.61 17.09 44.97 0.77 -1.85 15 18 C 0.15 3.79 7.31 22.43 0.16 3.95 15 19 F -0.09 -2.02 17.09 44.97 0.77 -1.25 15 20 C 0.04 1.16 7.31 22.43 0.16 1.32 15 21 F -0.10 -2.62 17.09 44.97 0.77 -1.85 15 22 C 0.21 6.86 7.21 22.40 0.16 7.02 15 23 F -0.09 -3.20 15.25 44.97 0.69 -2.51 15 24 H 0.29 12.75 8.31 -92.71 -0.77 11.98 15 25 H 0.41 18.83 8.02 -96.74 -0.78 18.05 15 Total: -1.00 -52.57 269.32 4.00 -48.57 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.55 Total: 9.18 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 2.22 Total: -16.29 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -0.03 Total: -84.26 kcal Atomic # 8 Polarization: -90.11 SS G_CDS: -4.11 Total: -94.22 kcal Atomic # 9 Polarization: -13.60 SS G_CDS: 3.65 Total: -9.95 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 16 Polarization: 109.54 SS G_CDS: -0.32 Total: 109.23 kcal Total: -52.57 4.00 -48.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568920.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.385 kcal (2) G-P(sol) polarization free energy of solvation -52.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds