Wall clock time and date at job start Tue Mar 31 2020 12:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46584 * 2 1 4 4 N 1.46502 * 109.46700 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99916 * 269.99643 * 4 3 2 6 6 H 1.07999 * 119.99585 * 324.91574 * 5 4 3 7 7 C 1.38809 * 119.99670 * 144.91258 * 5 4 3 8 8 N 1.31625 * 120.00564 * 338.17207 * 7 5 4 9 9 Si 1.86804 * 119.99737 * 158.17343 * 7 5 4 10 10 H 1.48495 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47321 * 119.99747 * 9 7 5 12 12 H 1.48495 * 109.47184 * 239.99885 * 9 7 5 13 13 C 1.46506 * 120.00107 * 90.00031 * 4 3 2 14 14 C 1.50698 * 109.47339 * 86.09671 * 13 4 3 15 15 C 1.33361 * 125.19319 * 89.99769 * 14 13 4 16 16 C 1.38456 * 114.92902 * 180.02562 * 15 14 13 17 17 C 1.50703 * 122.55154 * 180.02562 * 16 15 14 18 18 C 1.33478 * 114.89083 * 359.97438 * 16 15 14 19 19 Br 1.89097 * 125.20379 * 180.02562 * 18 16 15 20 20 S 1.75879 * 125.19129 * 269.69780 * 14 13 4 21 21 H 1.08994 * 109.47102 * 300.00346 * 1 2 3 22 22 H 1.08999 * 109.47231 * 60.00151 * 1 2 3 23 23 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47167 * 240.00516 * 2 1 3 25 25 H 1.08999 * 109.47231 * 119.99849 * 2 1 3 26 26 H 1.08994 * 109.47684 * 60.00010 * 3 2 1 27 27 H 1.09007 * 109.46921 * 299.99698 * 3 2 1 28 28 H 0.96996 * 119.99565 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46539 * 206.09884 * 13 4 3 30 30 H 1.08998 * 109.46820 * 326.09532 * 13 4 3 31 31 H 1.07997 * 122.53655 * 0.02562 * 15 14 13 32 32 H 1.08996 * 109.46701 * 89.99668 * 17 16 15 33 33 H 1.09005 * 109.46459 * 209.99615 * 17 16 15 34 34 H 1.08991 * 109.47174 * 329.99229 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.7976 1.9801 2.0355 7 6 5.3891 0.7515 1.2936 8 7 5.6630 -0.2270 0.4570 9 14 6.6140 1.2103 2.6274 10 1 6.0719 2.3347 3.4317 11 1 6.8472 0.0387 3.5095 12 1 7.8962 1.6217 2.0015 13 6 4.2370 1.4428 -1.2697 14 6 4.4042 2.8604 -1.7530 15 6 5.4313 3.6575 -1.4561 16 6 5.3690 4.9225 -2.0156 17 6 6.4382 5.9610 -1.7933 18 6 4.2903 5.1516 -2.7676 19 35 3.9124 6.7717 -3.6667 20 16 3.2782 3.7136 -2.8006 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9564 -0.8901 28 1 6.5010 -0.7095 0.5327 29 1 5.2179 0.9907 -1.1233 30 1 3.6797 0.8697 -2.0106 31 1 6.2498 3.3404 -0.8270 32 1 7.1997 5.8698 -2.5678 33 1 5.9934 6.9552 -1.8362 34 1 6.8946 5.8090 -0.8153 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:05 Heat of formation + Delta-G solvation = 35.721056 kcal Electronic energy + Delta-G solvation = -16815.469742 eV Core-core repulsion = 14114.325150 eV Total energy + Delta-G solvation = -2701.144592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -37.98031 -36.19583 -33.07272 -31.95716 -30.80711 -29.84371 -27.30410 -25.63791 -25.28054 -22.40864 -21.09167 -19.89326 -18.15234 -17.23309 -16.30592 -15.03990 -14.40447 -14.33629 -14.08160 -13.74764 -13.24566 -13.01801 -12.83569 -12.36997 -12.15100 -11.86779 -11.73824 -11.41343 -11.17258 -11.08396 -10.85137 -10.77573 -10.62205 -10.42977 -10.23471 -10.04186 -9.98015 -9.90642 -9.72408 -8.63713 -7.92485 -7.87749 -6.79640 -5.96524 -3.46600 1.34773 1.53829 2.27211 2.52464 3.17473 3.28112 3.37546 3.40681 4.38125 5.16613 5.31377 5.42243 5.51699 5.72038 5.77904 5.79822 5.85714 6.05074 6.08371 6.22795 6.24465 6.33408 6.50379 6.56730 6.63505 6.69439 6.93666 6.99791 7.08493 7.19817 7.40289 7.70371 8.34794 9.00824 9.63795 10.20400 11.06024 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.005124 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.519135 B = 5463.501726 C = 6868.624998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.146 3.854 4 N -0.570 5.570 5 C -0.252 4.252 6 H 0.064 0.936 7 C 0.012 3.988 8 N -0.884 5.884 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.286 1.286 13 C 0.199 3.801 14 C -0.116 4.116 15 C -0.156 4.156 16 C -0.043 4.043 17 C -0.101 4.101 18 C -0.236 4.236 19 Br -0.021 7.021 20 S 0.099 5.901 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.257 0.743 29 H 0.123 0.877 30 H 0.039 0.961 31 H 0.142 0.858 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 10.170 -7.843 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.020 3.980 4 N -0.288 5.288 5 C -0.382 4.382 6 H 0.082 0.918 7 C -0.188 4.188 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.070 3.930 14 C -0.238 4.238 15 C -0.186 4.186 16 C -0.060 4.060 17 C -0.160 4.160 18 C -0.431 4.431 19 Br 0.063 6.937 20 S 0.362 5.638 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.160 0.840 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.311 10.254 -8.853 14.216 hybrid contribution 2.041 0.254 1.551 2.576 sum -2.270 10.507 -7.302 12.995 Atomic orbital electron populations 1.21755 0.97618 1.00413 1.00780 1.22045 0.93177 1.00431 1.02206 1.20988 0.84705 0.93738 0.98551 1.43830 0.99620 1.83663 1.01698 1.19133 1.03871 1.25025 0.90193 0.91822 1.25117 1.00637 0.94964 0.98104 1.69957 1.24261 1.19297 1.39056 0.86347 0.81422 0.78267 0.81577 1.19963 1.21512 1.21206 1.19796 1.01968 0.84925 0.86345 1.26603 0.95147 1.04337 0.97674 1.19840 1.01666 0.92329 1.04765 1.18900 0.94955 0.96170 0.95973 1.20637 0.96404 0.96519 1.02426 1.25504 1.04973 0.98298 1.14363 1.96508 1.94855 1.26345 1.76004 1.84098 1.26856 1.03071 1.49811 0.93362 0.93614 0.93765 0.92990 0.91716 0.93712 0.94752 0.93265 0.85994 0.94297 0.84025 0.90997 0.91412 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.15 2.99 5.69 -4.04 -0.02 2.96 16 4 N -0.57 -13.35 2.43 -174.60 -0.42 -13.77 16 5 C -0.25 -6.49 9.48 -15.06 -0.14 -6.63 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.32 4.93 -17.43 -0.09 0.23 16 8 N -0.88 -23.69 11.37 55.49 0.63 -23.06 16 9 Si 0.89 20.52 29.61 -169.99 -5.03 15.48 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.20 4.42 5.74 -5.19 -0.03 4.39 16 14 C -0.12 -2.31 6.09 -36.01 -0.22 -2.53 16 15 C -0.16 -3.03 9.85 -41.21 -0.41 -3.43 16 16 C -0.04 -0.74 5.81 -106.21 -0.62 -1.36 16 17 C -0.10 -1.39 9.85 36.01 0.35 -1.04 16 18 C -0.24 -3.96 6.95 29.07 0.20 -3.76 16 19 Br -0.02 -0.29 32.86 -68.01 -2.24 -2.52 16 20 S 0.10 1.73 23.33 -107.50 -2.51 -0.78 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 27 H 0.03 0.66 8.07 -51.92 -0.42 0.24 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.12 3.04 5.39 -51.93 -0.28 2.76 16 30 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.87 7.26 -51.93 -0.38 0.49 16 34 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -26.00 319.61 -10.36 -36.36 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.85 Total: -0.68 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.77 Total: -15.85 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.21 Total: -36.83 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.51 Total: -0.78 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.24 Total: -2.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.00 -10.36 -36.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.086 kcal (2) G-P(sol) polarization free energy of solvation -26.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds