Wall clock time and date at job start Tue Mar 31 2020 12:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46584 * 2 1 4 4 N 1.46502 * 109.46700 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99916 * 269.99643 * 4 3 2 6 6 H 1.07999 * 119.99585 * 324.91574 * 5 4 3 7 7 C 1.38809 * 119.99670 * 144.91258 * 5 4 3 8 8 N 1.31625 * 120.00564 * 338.17207 * 7 5 4 9 9 Si 1.86804 * 119.99737 * 158.17343 * 7 5 4 10 10 H 1.48495 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47321 * 119.99747 * 9 7 5 12 12 H 1.48495 * 109.47184 * 239.99885 * 9 7 5 13 13 C 1.46506 * 120.00107 * 90.00031 * 4 3 2 14 14 C 1.50698 * 109.47339 * 86.09671 * 13 4 3 15 15 C 1.33361 * 125.19319 * 89.99769 * 14 13 4 16 16 C 1.38456 * 114.92902 * 180.02562 * 15 14 13 17 17 C 1.50703 * 122.55154 * 180.02562 * 16 15 14 18 18 C 1.33478 * 114.89083 * 359.97438 * 16 15 14 19 19 Br 1.89097 * 125.20379 * 180.02562 * 18 16 15 20 20 S 1.75879 * 125.19129 * 269.69780 * 14 13 4 21 21 H 1.08994 * 109.47102 * 300.00346 * 1 2 3 22 22 H 1.08999 * 109.47231 * 60.00151 * 1 2 3 23 23 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47167 * 240.00516 * 2 1 3 25 25 H 1.08999 * 109.47231 * 119.99849 * 2 1 3 26 26 H 1.08994 * 109.47684 * 60.00010 * 3 2 1 27 27 H 1.09007 * 109.46921 * 299.99698 * 3 2 1 28 28 H 0.96996 * 119.99565 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46539 * 206.09884 * 13 4 3 30 30 H 1.08998 * 109.46820 * 326.09532 * 13 4 3 31 31 H 1.07997 * 122.53655 * 0.02562 * 15 14 13 32 32 H 1.08996 * 109.46701 * 89.99668 * 17 16 15 33 33 H 1.09005 * 109.46459 * 209.99615 * 17 16 15 34 34 H 1.08991 * 109.47174 * 329.99229 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.7976 1.9801 2.0355 7 6 5.3891 0.7515 1.2936 8 7 5.6630 -0.2270 0.4570 9 14 6.6140 1.2103 2.6274 10 1 6.0719 2.3347 3.4317 11 1 6.8472 0.0387 3.5095 12 1 7.8962 1.6217 2.0015 13 6 4.2370 1.4428 -1.2697 14 6 4.4042 2.8604 -1.7530 15 6 5.4313 3.6575 -1.4561 16 6 5.3690 4.9225 -2.0156 17 6 6.4382 5.9610 -1.7933 18 6 4.2903 5.1516 -2.7676 19 35 3.9124 6.7717 -3.6667 20 16 3.2782 3.7136 -2.8006 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9564 -0.8901 28 1 6.5010 -0.7095 0.5327 29 1 5.2179 0.9907 -1.1233 30 1 3.6797 0.8697 -2.0106 31 1 6.2498 3.3404 -0.8270 32 1 7.1997 5.8698 -2.5678 33 1 5.9934 6.9552 -1.8362 34 1 6.8946 5.8090 -0.8153 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:03 Heat of formation + Delta-G solvation = 25.082204 kcal Electronic energy + Delta-G solvation = -16815.931077 eV Core-core repulsion = 14114.325150 eV Total energy + Delta-G solvation = -2701.605928 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44079 -37.87619 -34.68761 -33.55809 -32.33780 -31.24112 -28.70393 -27.37333 -26.77807 -24.06651 -22.59811 -21.52267 -19.58531 -18.98083 -17.86816 -16.86785 -16.05049 -15.84772 -15.73344 -15.16956 -14.78715 -14.51530 -14.15108 -13.83167 -13.61221 -13.32146 -13.10160 -12.97499 -12.75302 -12.59465 -12.51738 -12.31161 -12.22462 -11.95072 -11.85073 -11.64674 -11.59904 -11.36073 -11.17039 -10.57386 -9.37139 -9.25015 -8.67789 -7.90629 -5.44948 -0.07935 0.18223 0.92074 1.03759 1.43177 1.48368 1.57024 1.71843 2.49306 3.21529 3.70202 3.98161 4.24980 4.31393 4.36927 4.47181 4.59289 4.62921 4.71141 4.76854 4.79353 4.93621 5.06596 5.16397 5.25407 5.26989 5.43676 5.45982 5.51020 5.57214 5.62580 5.72865 6.41965 7.09469 7.76994 8.30098 9.09519 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.005124 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.519135 B = 5463.501726 C = 6868.624998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.145 3.855 4 N -0.585 5.585 5 C -0.260 4.260 6 H 0.054 0.946 7 C -0.027 4.027 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.208 3.792 14 C -0.144 4.144 15 C -0.157 4.157 16 C -0.052 4.052 17 C -0.099 4.099 18 C -0.237 4.237 19 Br 0.015 6.985 20 S 0.128 5.872 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.254 0.746 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 12.110 -8.613 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.304 5.304 5 C -0.390 4.390 6 H 0.072 0.928 7 C -0.224 4.224 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.211 1.211 13 C 0.079 3.921 14 C -0.265 4.265 15 C -0.188 4.188 16 C -0.068 4.068 17 C -0.157 4.157 18 C -0.433 4.433 19 Br 0.098 6.902 20 S 0.391 5.609 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.003 12.211 -9.634 16.338 hybrid contribution 2.201 -0.240 1.670 2.774 sum -2.802 11.970 -7.963 14.648 Atomic orbital electron populations 1.21667 0.94151 1.01785 1.01983 1.21906 0.96161 0.98919 1.00048 1.21081 0.83331 0.94635 0.99015 1.43974 1.00734 1.84317 1.01386 1.19211 1.04351 1.24566 0.90908 0.92842 1.25652 1.01867 0.95014 0.99910 1.70067 1.24441 1.20353 1.40631 0.85514 0.79597 0.77717 0.79503 1.19645 1.21843 1.21065 1.19448 1.00262 0.86354 0.86016 1.26210 0.96967 1.03606 0.99749 1.19922 1.01030 0.93444 1.04396 1.19098 0.96093 0.95937 0.95698 1.20708 0.95869 0.95925 1.03245 1.25807 1.04391 0.99317 1.13756 1.96547 1.94653 1.23844 1.75167 1.83880 1.25672 1.02903 1.48478 0.92492 0.92026 0.92361 0.94305 0.94680 0.93940 0.93343 0.93611 0.88968 0.94386 0.85468 0.89338 0.90161 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.13 -5.00 6.26 30.60 0.19 -4.80 16 3 C 0.14 5.92 5.69 86.38 0.49 6.42 16 4 N -0.59 -28.00 2.43 -706.32 -1.72 -29.71 16 5 C -0.26 -13.71 9.48 84.03 0.80 -12.91 16 6 H 0.05 2.87 7.92 -2.91 -0.02 2.85 16 7 C -0.03 -1.41 4.93 84.86 0.42 -0.99 16 8 N -0.91 -50.51 11.37 21.65 0.25 -50.26 16 9 Si 0.95 43.00 29.61 68.60 2.03 45.03 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.21 9.51 5.74 85.63 0.49 10.00 16 14 C -0.14 -5.76 6.09 24.58 0.15 -5.61 16 15 C -0.16 -6.07 9.85 21.22 0.21 -5.86 16 16 C -0.05 -1.70 5.81 -20.89 -0.12 -1.82 16 17 C -0.10 -2.49 9.85 71.24 0.70 -1.78 16 18 C -0.24 -7.43 6.95 66.74 0.46 -6.96 16 19 Br 0.01 0.36 32.86 -20.37 -0.67 -0.31 16 20 S 0.13 4.27 23.33 -56.49 -1.32 2.95 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 27 H 0.05 1.82 8.07 -2.38 -0.02 1.80 16 28 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.09 4.81 5.39 -2.39 -0.01 4.79 16 30 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.81 7.26 -2.38 -0.02 1.80 16 34 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 Total: -1.00 -55.96 319.61 4.16 -51.80 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.08 Total: 8.07 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.51 Total: -27.56 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.47 Total: -79.98 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.32 Total: 2.95 kcal Atomic # 35 Polarization: 0.36 SS G_CDS: -0.67 Total: -0.31 kcal Total: -55.96 4.16 -51.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.880 kcal (2) G-P(sol) polarization free energy of solvation -55.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds