Wall clock time and date at job start Tue Mar 31 2020 11:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47352 * 2 1 4 4 C 1.36939 * 120.00021 * 83.17309 * 3 2 1 5 5 H 1.07998 * 120.00000 * 170.07078 * 4 3 2 6 6 C 1.38811 * 120.00135 * 350.06525 * 4 3 2 7 7 N 1.31619 * 119.99999 * 1.24380 * 6 4 3 8 8 Si 1.86802 * 120.00182 * 181.24458 * 6 4 3 9 9 H 1.48501 * 109.47121 * 59.99623 * 8 6 4 10 10 H 1.48493 * 109.47051 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46791 * 299.99837 * 8 6 4 12 12 C 1.46504 * 120.00261 * 263.17526 * 3 2 1 13 13 C 1.50699 * 109.47004 * 262.86354 * 12 3 2 14 14 C 1.38225 * 119.99414 * 267.14050 * 13 12 3 15 15 C 1.38334 * 119.99353 * 179.74985 * 14 13 12 16 16 Cl 1.73601 * 120.00154 * 180.27092 * 15 14 13 17 17 C 1.38377 * 119.99745 * 0.54555 * 15 14 13 18 18 C 1.38184 * 119.99116 * 359.70419 * 17 15 14 19 19 C 1.38307 * 120.00380 * 87.41128 * 13 12 3 20 20 Br 1.89104 * 119.99445 * 0.02562 * 19 13 12 21 21 H 1.09004 * 109.46961 * 306.15706 * 1 2 3 22 22 H 1.08993 * 109.46775 * 66.15739 * 1 2 3 23 23 H 1.09000 * 109.47142 * 186.15739 * 1 2 3 24 24 H 1.09000 * 109.47079 * 239.99799 * 2 1 3 25 25 H 1.09003 * 109.47309 * 120.00211 * 2 1 3 26 26 H 0.96993 * 120.00226 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.46789 * 22.85878 * 12 3 2 28 28 H 1.08999 * 109.47225 * 142.85589 * 12 3 2 29 29 H 1.08004 * 120.00520 * 359.97438 * 14 13 12 30 30 H 1.07993 * 120.00389 * 179.68153 * 17 15 14 31 31 H 1.08001 * 119.99425 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1137 2.0737 1.1775 5 1 2.6199 3.0274 1.2036 6 6 1.5597 1.5500 2.3375 7 7 0.9641 0.3766 2.3109 8 14 1.6593 2.5107 3.9365 9 1 0.9762 3.8188 3.7714 10 1 0.9979 1.7394 5.0194 11 1 3.0838 2.7373 4.2898 12 6 2.4047 2.0216 -1.2597 13 6 3.8980 1.9221 -1.4365 14 6 4.7155 2.9469 -0.9981 15 6 6.0867 2.8532 -1.1557 16 17 7.1141 4.1370 -0.5989 17 6 6.6388 1.7388 -1.7623 18 6 5.8209 0.7168 -2.2051 19 6 4.4501 0.8080 -2.0423 20 35 3.3308 -0.5900 -2.6495 21 1 -0.3633 0.6063 0.8298 22 1 -0.3632 0.4154 -0.9399 23 1 -0.3633 -1.0217 0.1102 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.5767 0.0108 3.1213 27 1 1.9065 1.5206 -2.0898 28 1 2.1103 3.0708 -1.2392 29 1 4.2841 3.8190 -0.5294 30 1 7.7088 1.6679 -1.8900 31 1 6.2517 -0.1528 -2.6789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:01 Heat of formation + Delta-G solvation = 56.863514 kcal Electronic energy + Delta-G solvation = -16843.045283 eV Core-core repulsion = 14004.940696 eV Total energy + Delta-G solvation = -2838.104587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.23704 -36.52498 -35.84307 -32.46926 -31.78633 -30.43203 -29.22294 -28.47940 -25.74271 -23.25080 -22.37094 -21.31621 -20.01657 -16.97368 -16.32716 -15.50147 -15.23181 -15.07302 -13.84619 -13.69412 -13.47871 -13.09984 -13.05453 -12.11405 -11.82636 -11.76946 -11.67118 -11.22146 -11.08182 -10.90251 -10.75273 -10.64194 -10.46229 -10.25402 -10.02554 -9.86096 -9.54053 -9.00183 -8.67656 -8.28811 -8.15239 -6.80930 -5.58559 -3.11070 1.18318 1.48257 1.91889 2.28206 3.39136 3.44567 3.44732 3.72649 4.50234 4.91146 5.00385 5.35948 5.44410 5.51122 5.68864 5.71924 5.98963 6.12801 6.22560 6.37091 6.54840 6.73773 6.80645 6.90576 7.14078 7.22770 7.40544 7.66629 8.00125 8.27548 8.48920 9.30271 9.87818 10.30183 11.30847 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.008009 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.789342 B = 3495.444848 C = 5657.703775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.152 3.848 3 N -0.584 5.584 4 C -0.242 4.242 5 H 0.071 0.929 6 C -0.005 4.005 7 N -0.903 5.903 8 Si 0.907 3.093 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.173 3.827 13 C -0.039 4.039 14 C -0.092 4.092 15 C -0.020 4.020 16 Cl -0.078 7.078 17 C -0.126 4.126 18 C -0.084 4.084 19 C -0.082 4.082 20 Br -0.042 7.042 21 H 0.086 0.914 22 H -0.003 1.003 23 H 0.017 0.983 24 H 0.025 0.975 25 H 0.092 0.908 26 H 0.249 0.751 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 0.157 -11.043 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 N -0.303 5.303 4 C -0.372 4.372 5 H 0.089 0.911 6 C -0.201 4.201 7 N -0.550 5.550 8 Si 0.738 3.262 9 H -0.212 1.212 10 H -0.216 1.216 11 H -0.212 1.212 12 C 0.044 3.956 13 C -0.045 4.045 14 C -0.112 4.112 15 C -0.047 4.047 16 Cl -0.049 7.049 17 C -0.146 4.146 18 C -0.104 4.104 19 C -0.162 4.162 20 Br 0.044 6.956 21 H 0.104 0.896 22 H 0.016 0.984 23 H 0.036 0.964 24 H 0.043 0.957 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.819 -0.371 -11.033 13.528 hybrid contribution 0.492 0.876 1.236 1.593 sum 8.311 0.505 -9.797 12.857 Atomic orbital electron populations 1.22398 0.99352 0.98739 0.98769 1.21361 0.92522 0.83704 0.99613 1.44183 1.73310 1.11915 1.00907 1.19259 1.29767 1.01894 0.86235 0.91105 1.24821 0.99748 0.97448 0.98118 1.70284 1.41475 1.17124 1.26120 0.86279 0.77580 0.79051 0.83313 1.21197 1.21640 1.21222 1.19964 0.86330 0.98405 0.90909 1.21249 1.01155 0.90728 0.91404 1.20940 0.90539 0.99944 0.99822 1.21040 0.91520 0.90973 1.01164 1.98351 1.67924 1.50304 1.88361 1.20820 1.00090 0.92848 1.00857 1.20938 0.91382 0.98633 0.99443 1.21731 0.93790 0.95348 1.05320 1.96602 1.66257 1.45680 1.87064 0.89579 0.98438 0.96383 0.95739 0.88980 0.93992 0.91642 0.92646 0.84513 0.84933 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.29 37.16 0.35 -2.83 16 2 C 0.15 3.65 5.67 -4.04 -0.02 3.62 16 3 N -0.58 -13.93 2.55 -174.61 -0.44 -14.37 16 4 C -0.24 -6.32 9.75 -15.06 -0.15 -6.47 16 5 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 6 C -0.01 -0.15 5.21 -17.43 -0.09 -0.24 16 7 N -0.90 -24.80 7.22 55.49 0.40 -24.40 16 8 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.17 3.42 5.36 -5.19 -0.03 3.40 16 13 C -0.04 -0.71 5.40 -104.60 -0.57 -1.27 16 14 C -0.09 -1.56 9.47 -39.55 -0.37 -1.93 16 15 C -0.02 -0.30 6.32 -39.49 -0.25 -0.55 16 16 Cl -0.08 -1.07 28.96 -51.86 -1.50 -2.57 16 17 C -0.13 -1.73 9.83 -39.55 -0.39 -2.11 16 18 C -0.08 -1.19 9.79 -39.56 -0.39 -1.58 16 19 C -0.08 -1.35 6.22 -39.52 -0.25 -1.60 16 20 Br -0.04 -0.67 28.67 -68.01 -1.95 -2.62 16 21 H 0.09 2.30 5.97 -51.93 -0.31 1.99 16 22 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.53 4.32 -51.93 -0.22 0.30 16 25 H 0.09 2.52 5.98 -51.93 -0.31 2.21 16 26 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.07 1.24 6.63 -51.92 -0.34 0.89 16 28 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 29 H 0.14 2.28 8.06 -52.48 -0.42 1.85 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 288.10 15.07 4.34 4.34 Total: -1.00 -27.03 288.10 -9.60 -36.63 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.27 Total: -1.99 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.15 Total: -11.56 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.04 Total: -38.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -1.95 Total: -2.62 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.03 -9.60 -36.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.492 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds