Wall clock time and date at job start Tue Mar 31 2020 11:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47352 * 2 1 4 4 C 1.36939 * 120.00021 * 83.17309 * 3 2 1 5 5 H 1.07998 * 120.00000 * 170.07078 * 4 3 2 6 6 C 1.38811 * 120.00135 * 350.06525 * 4 3 2 7 7 N 1.31619 * 119.99999 * 1.24380 * 6 4 3 8 8 Si 1.86802 * 120.00182 * 181.24458 * 6 4 3 9 9 H 1.48501 * 109.47121 * 59.99623 * 8 6 4 10 10 H 1.48493 * 109.47051 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46791 * 299.99837 * 8 6 4 12 12 C 1.46504 * 120.00261 * 263.17526 * 3 2 1 13 13 C 1.50699 * 109.47004 * 262.86354 * 12 3 2 14 14 C 1.38225 * 119.99414 * 267.14050 * 13 12 3 15 15 C 1.38334 * 119.99353 * 179.74985 * 14 13 12 16 16 Cl 1.73601 * 120.00154 * 180.27092 * 15 14 13 17 17 C 1.38377 * 119.99745 * 0.54555 * 15 14 13 18 18 C 1.38184 * 119.99116 * 359.70419 * 17 15 14 19 19 C 1.38307 * 120.00380 * 87.41128 * 13 12 3 20 20 Br 1.89104 * 119.99445 * 0.02562 * 19 13 12 21 21 H 1.09004 * 109.46961 * 306.15706 * 1 2 3 22 22 H 1.08993 * 109.46775 * 66.15739 * 1 2 3 23 23 H 1.09000 * 109.47142 * 186.15739 * 1 2 3 24 24 H 1.09000 * 109.47079 * 239.99799 * 2 1 3 25 25 H 1.09003 * 109.47309 * 120.00211 * 2 1 3 26 26 H 0.96993 * 120.00226 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.46789 * 22.85878 * 12 3 2 28 28 H 1.08999 * 109.47225 * 142.85589 * 12 3 2 29 29 H 1.08004 * 120.00520 * 359.97438 * 14 13 12 30 30 H 1.07993 * 120.00389 * 179.68153 * 17 15 14 31 31 H 1.08001 * 119.99425 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1137 2.0737 1.1775 5 1 2.6199 3.0274 1.2036 6 6 1.5597 1.5500 2.3375 7 7 0.9641 0.3766 2.3109 8 14 1.6593 2.5107 3.9365 9 1 0.9762 3.8188 3.7714 10 1 0.9979 1.7394 5.0194 11 1 3.0838 2.7373 4.2898 12 6 2.4047 2.0216 -1.2597 13 6 3.8980 1.9221 -1.4365 14 6 4.7155 2.9469 -0.9981 15 6 6.0867 2.8532 -1.1557 16 17 7.1141 4.1370 -0.5989 17 6 6.6388 1.7388 -1.7623 18 6 5.8209 0.7168 -2.2051 19 6 4.4501 0.8080 -2.0423 20 35 3.3308 -0.5900 -2.6495 21 1 -0.3633 0.6063 0.8298 22 1 -0.3632 0.4154 -0.9399 23 1 -0.3633 -1.0217 0.1102 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.5767 0.0108 3.1213 27 1 1.9065 1.5206 -2.0898 28 1 2.1103 3.0708 -1.2392 29 1 4.2841 3.8190 -0.5294 30 1 7.7088 1.6679 -1.8900 31 1 6.2517 -0.1528 -2.6789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:00 Heat of formation + Delta-G solvation = 44.956723 kcal Electronic energy + Delta-G solvation = -16843.561601 eV Core-core repulsion = 14004.940696 eV Total energy + Delta-G solvation = -2838.620905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50025 -37.95392 -37.32946 -34.03976 -33.06581 -32.19057 -30.79782 -29.93672 -27.39551 -25.06816 -23.64845 -22.79573 -21.71708 -18.66934 -17.75381 -17.06781 -16.78226 -16.34909 -15.57392 -15.25134 -14.93544 -14.53742 -14.41151 -13.89498 -13.43078 -13.24173 -13.03364 -12.84714 -12.67053 -12.53569 -12.36775 -12.29464 -11.95560 -11.83592 -11.78575 -11.52867 -11.25135 -10.62805 -10.13223 -9.92918 -9.47973 -8.69739 -7.58205 -5.11101 -0.04771 0.26597 0.66890 1.11386 1.49870 1.50044 1.55814 2.44858 2.60482 3.39755 3.75145 3.81653 3.90528 4.16382 4.27486 4.46281 4.62416 4.89255 4.91461 4.95304 5.03746 5.17312 5.24414 5.33703 5.38659 5.48636 5.63958 5.67784 6.01596 6.30903 6.50753 7.31004 7.99015 8.36839 9.29008 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.008009 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.789342 B = 3495.444848 C = 5657.703775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.159 3.841 3 N -0.599 5.599 4 C -0.243 4.243 5 H 0.072 0.928 6 C -0.056 4.056 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.282 1.282 10 H -0.298 1.298 11 H -0.285 1.285 12 C 0.174 3.826 13 C -0.059 4.059 14 C -0.105 4.105 15 C -0.026 4.026 16 Cl -0.064 7.064 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.094 4.094 20 Br -0.040 7.040 21 H 0.055 0.945 22 H 0.008 0.992 23 H 0.023 0.977 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.240 0.760 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.166 0.834 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.132 0.345 -12.113 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.034 3.966 3 N -0.319 5.319 4 C -0.373 4.373 5 H 0.090 0.910 6 C -0.249 4.249 7 N -0.570 5.570 8 Si 0.790 3.210 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.212 1.212 12 C 0.047 3.953 13 C -0.065 4.065 14 C -0.125 4.125 15 C -0.053 4.053 16 Cl -0.035 7.035 17 C -0.132 4.132 18 C -0.098 4.098 19 C -0.174 4.174 20 Br 0.046 6.954 21 H 0.074 0.926 22 H 0.027 0.973 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.184 0.816 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.689 -0.156 -12.141 15.534 hybrid contribution 0.027 0.867 1.450 1.690 sum 9.717 0.711 -10.690 14.464 Atomic orbital electron populations 1.22247 0.99473 0.98532 0.97972 1.21182 0.92383 0.84007 0.98982 1.44250 1.74281 1.11797 1.01594 1.19485 1.28726 1.01933 0.87138 0.90990 1.25425 1.00525 0.98441 1.00545 1.70490 1.42567 1.18091 1.25880 0.85439 0.77202 0.77938 0.80385 1.20838 1.22418 1.21178 1.19992 0.87882 0.98047 0.89401 1.20932 0.99726 0.92142 0.93653 1.20950 0.91586 0.99752 1.00224 1.21141 0.91108 0.91923 1.01103 1.98358 1.67191 1.49784 1.88213 1.21234 1.01733 0.91561 0.98703 1.21300 0.90309 0.99632 0.98568 1.21919 0.95014 0.94862 1.05620 1.96586 1.66578 1.45394 1.86823 0.92584 0.97274 0.95792 0.93334 0.92511 0.94979 0.90971 0.92659 0.85094 0.81608 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 9.29 71.98 0.67 -5.21 16 2 C 0.16 7.65 5.67 86.38 0.49 8.14 16 3 N -0.60 -28.61 2.55 -706.33 -1.80 -30.41 16 4 C -0.24 -12.75 9.75 84.03 0.82 -11.93 16 5 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 6 C -0.06 -3.03 5.21 84.86 0.44 -2.59 16 7 N -0.92 -51.80 7.22 21.65 0.16 -51.64 16 8 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 C 0.17 6.82 5.36 85.63 0.46 7.28 16 13 C -0.06 -2.07 5.40 -19.85 -0.11 -2.17 16 14 C -0.10 -3.42 9.47 22.29 0.21 -3.21 16 15 C -0.03 -0.72 6.32 22.33 0.14 -0.57 16 16 Cl -0.06 -1.61 28.96 -2.72 -0.08 -1.69 16 17 C -0.11 -2.67 9.83 22.29 0.22 -2.45 16 18 C -0.08 -1.96 9.79 22.28 0.22 -1.74 16 19 C -0.09 -2.93 6.22 22.31 0.14 -2.79 16 20 Br -0.04 -1.20 28.67 -20.37 -0.58 -1.79 16 21 H 0.06 3.04 5.97 -2.39 -0.01 3.03 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 2.07 4.32 -2.39 -0.01 2.06 16 25 H 0.06 3.16 5.98 -2.39 -0.01 3.15 16 26 H 0.24 13.41 8.31 -92.71 -0.77 12.64 16 27 H 0.07 2.68 6.63 -2.38 -0.02 2.66 16 28 H 0.06 2.13 8.02 -2.39 -0.02 2.11 16 29 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -57.63 288.10 4.57 -53.06 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.14 Total: 2.79 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.70 Total: -17.26 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.64 Total: -82.05 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Atomic # 35 Polarization: -1.20 SS G_CDS: -0.58 Total: -1.79 kcal Total: -57.63 4.57 -53.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.017 kcal (2) G-P(sol) polarization free energy of solvation -57.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds