Wall clock time and date at job start Tue Mar 31 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00141 * 2 1 4 4 H 1.48491 * 109.47372 * 240.00005 * 3 2 1 5 5 H 1.48497 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46803 * 120.00212 * 3 2 1 7 7 C 1.37884 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47017 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47195 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54593 * 68.37202 * 11 10 9 13 13 O 1.42102 * 110.54408 * 291.62379 * 11 10 9 14 14 N 1.65602 * 104.45143 * 179.97438 * 11 10 9 15 15 C 1.34779 * 120.00018 * 64.99800 * 14 11 10 16 16 O 1.21558 * 119.99947 * 0.02562 * 15 14 11 17 17 C 1.47785 * 119.99949 * 180.02562 * 15 14 11 18 18 C 1.39616 * 120.12898 * 0.26837 * 17 15 14 19 19 C 1.37895 * 119.86407 * 180.21481 * 18 17 15 20 20 C 1.38514 * 120.12871 * 359.51478 * 19 18 17 21 21 Cl 1.73606 * 119.86591 * 180.27825 * 20 19 18 22 22 C 1.38506 * 120.26659 * 0.25919 * 20 19 18 23 23 C 1.37896 * 120.13471 * 359.97438 * 22 20 19 24 24 H 0.97003 * 119.99997 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47587 * 59.99871 * 9 7 2 26 26 H 1.09004 * 109.46793 * 299.99664 * 9 7 2 27 27 H 1.09004 * 109.47421 * 59.99506 * 10 9 7 28 28 H 1.09004 * 109.47020 * 299.99471 * 10 9 7 29 29 H 0.96996 * 119.99949 * 245.00218 * 14 11 10 30 30 H 1.07998 * 120.06753 * 0.02562 * 18 17 15 31 31 H 1.08002 * 119.93741 * 179.79878 * 19 18 17 32 32 H 1.08007 * 119.93552 * 180.02562 * 22 20 19 33 33 H 1.08004 * 120.06955 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3383 -5.2330 -0.0021 12 8 0.6647 -5.4195 -1.2393 13 8 0.6637 -5.4199 1.2346 14 7 2.5204 -6.3927 -0.0025 15 6 3.3469 -6.5129 1.0554 16 8 3.2243 -5.7703 2.0099 17 6 4.4022 -7.5475 1.0548 18 6 4.5491 -8.3981 -0.0426 19 6 5.5328 -9.3644 -0.0355 20 6 6.3807 -9.4855 1.0532 21 17 7.6214 -10.6997 1.0518 22 6 6.2428 -8.6414 2.1426 23 6 5.2598 -7.6743 2.1491 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8713 -3.6047 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 2.6181 -6.9855 -0.7640 30 1 3.8916 -8.3015 -0.8939 31 1 5.6453 -10.0252 -0.8823 32 1 6.9072 -8.7402 2.9884 33 1 5.1535 -7.0164 2.9990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095987708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:55 Heat of formation + Delta-G solvation = -96.788086 kcal Electronic energy + Delta-G solvation = -21193.470943 eV Core-core repulsion = 17565.174914 eV Total energy + Delta-G solvation = -3628.296029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74643 -38.94369 -36.95209 -36.72251 -35.67870 -34.71375 -33.92071 -31.60488 -31.37405 -31.19257 -25.66825 -24.83535 -23.34891 -21.80529 -21.49962 -19.58044 -18.75900 -17.65836 -17.16187 -16.59807 -15.91081 -15.88718 -15.53706 -15.10923 -14.99603 -14.59748 -14.49735 -14.10740 -13.89666 -13.46840 -12.76751 -12.56533 -12.42257 -12.08328 -11.99115 -11.83111 -11.77205 -11.66973 -11.34511 -11.09030 -11.03479 -10.95172 -10.54572 -10.42440 -10.35378 -9.73809 -9.64617 -9.31527 -9.21181 -8.50651 -6.13159 -4.18833 0.10307 0.43593 0.73593 1.55453 2.14079 2.62152 3.21565 3.27863 3.32464 3.34508 3.86048 4.05349 4.16835 4.30211 4.36586 4.56221 4.64246 4.72060 4.83469 5.02961 5.22104 5.37212 5.51841 5.55021 5.62795 5.68024 5.73680 6.12320 6.42228 6.52970 7.26030 7.30793 7.33048 7.79597 8.15197 8.83888 9.45766 10.97899 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.002855 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.154099 B = 9805.640394 C =10538.967197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.565 3.435 12 O -0.952 6.952 13 O -0.935 6.935 14 N -1.056 6.056 15 C 0.580 3.420 16 O -0.480 6.480 17 C -0.135 4.135 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.009 4.009 21 Cl -0.062 7.062 22 C -0.118 4.118 23 C -0.041 4.041 24 H 0.266 0.734 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.426 0.574 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.172 -21.274 -0.263 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.665 3.335 12 O -0.942 6.942 13 O -0.925 6.925 14 N -0.817 5.817 15 C 0.367 3.633 16 O -0.352 6.352 17 C -0.140 4.140 18 C -0.087 4.087 19 C -0.137 4.137 20 C -0.036 4.036 21 Cl -0.033 7.033 22 C -0.137 4.137 23 C -0.060 4.060 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.262 0.738 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.086 -20.968 0.458 24.720 hybrid contribution 1.183 0.681 -0.527 1.463 sum 14.268 -20.286 -0.069 24.802 Atomic orbital electron populations 1.69941 1.06120 1.27378 1.49396 1.25063 0.94994 0.99547 0.94827 0.86500 0.79477 0.82390 0.78741 1.20068 1.21057 1.20013 1.20937 0.93080 0.89568 1.52414 0.91987 1.18993 0.92609 0.90269 0.99068 1.30340 1.13728 1.15967 1.10878 1.06785 0.74901 0.77234 0.74548 1.93595 1.70337 1.85283 1.45026 1.93604 1.70105 1.84312 1.44527 1.55412 1.49159 1.50516 1.26583 1.18088 0.80480 0.83462 0.81271 1.90999 1.69375 1.42577 1.32273 1.19997 0.98517 0.98566 0.96890 1.21333 0.96874 0.93183 0.97317 1.21019 0.95060 0.99516 0.98099 1.21271 0.92727 0.93091 0.96485 1.98400 1.52231 1.54135 1.98531 1.21107 0.99440 0.95079 0.98068 1.21364 0.91342 0.95790 0.97465 0.92424 0.94718 0.94533 0.84988 0.85934 0.73768 0.84174 0.83909 0.83836 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.63 16 10 C -0.57 -11.17 5.82 37.16 0.22 -10.96 16 11 S 2.57 45.50 5.11 -107.50 -0.55 44.95 16 12 O -0.95 -18.30 18.08 -57.54 -1.04 -19.34 16 13 O -0.94 -20.12 17.04 -64.78 -1.10 -21.23 16 14 N -1.06 -13.07 5.55 30.51 0.17 -12.90 16 15 C 0.58 7.65 7.51 -12.36 -0.09 7.56 16 16 O -0.48 -8.12 14.45 -11.80 -0.17 -8.29 16 17 C -0.13 -1.33 5.87 -104.97 -0.62 -1.94 16 18 C -0.07 -0.49 9.54 -39.19 -0.37 -0.86 16 19 C -0.12 -0.77 9.81 -39.61 -0.39 -1.16 16 20 C -0.01 -0.06 6.33 -39.38 -0.25 -0.31 16 21 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 22 C -0.12 -0.87 9.81 -39.61 -0.39 -1.26 16 23 C -0.04 -0.36 9.59 -39.19 -0.38 -0.74 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.13 2.51 7.19 -51.92 -0.37 2.14 16 28 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 29 H 0.43 3.45 6.82 -34.47 -0.24 3.21 16 30 H 0.14 0.62 6.40 -52.49 -0.34 0.29 16 31 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.15 1.33 7.65 -52.48 -0.40 0.93 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -36.17 321.81 -9.45 -45.62 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -3.00 Total: 0.00 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.82 Total: -22.25 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.91 Total: -38.63 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.31 Total: -48.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 45.50 SS G_CDS: -0.55 Total: 44.95 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.17 -9.45 -45.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095987708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.165 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds