Wall clock time and date at job start Tue Mar 31 2020 12:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00141 * 2 1 4 4 H 1.48491 * 109.47372 * 240.00005 * 3 2 1 5 5 H 1.48497 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46803 * 120.00212 * 3 2 1 7 7 C 1.37884 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47017 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47195 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54593 * 68.37202 * 11 10 9 13 13 O 1.42102 * 110.54408 * 291.62379 * 11 10 9 14 14 N 1.65602 * 104.45143 * 179.97438 * 11 10 9 15 15 C 1.34779 * 120.00018 * 64.99800 * 14 11 10 16 16 O 1.21558 * 119.99947 * 0.02562 * 15 14 11 17 17 C 1.47785 * 119.99949 * 180.02562 * 15 14 11 18 18 C 1.39616 * 120.12898 * 0.26837 * 17 15 14 19 19 C 1.37895 * 119.86407 * 180.21481 * 18 17 15 20 20 C 1.38514 * 120.12871 * 359.51478 * 19 18 17 21 21 Cl 1.73606 * 119.86591 * 180.27825 * 20 19 18 22 22 C 1.38506 * 120.26659 * 0.25919 * 20 19 18 23 23 C 1.37896 * 120.13471 * 359.97438 * 22 20 19 24 24 H 0.97003 * 119.99997 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47587 * 59.99871 * 9 7 2 26 26 H 1.09004 * 109.46793 * 299.99664 * 9 7 2 27 27 H 1.09004 * 109.47421 * 59.99506 * 10 9 7 28 28 H 1.09004 * 109.47020 * 299.99471 * 10 9 7 29 29 H 0.96996 * 119.99949 * 245.00218 * 14 11 10 30 30 H 1.07998 * 120.06753 * 0.02562 * 18 17 15 31 31 H 1.08002 * 119.93741 * 179.79878 * 19 18 17 32 32 H 1.08007 * 119.93552 * 180.02562 * 22 20 19 33 33 H 1.08004 * 120.06955 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3383 -5.2330 -0.0021 12 8 0.6647 -5.4195 -1.2393 13 8 0.6637 -5.4199 1.2346 14 7 2.5204 -6.3927 -0.0025 15 6 3.3469 -6.5129 1.0554 16 8 3.2243 -5.7703 2.0099 17 6 4.4022 -7.5475 1.0548 18 6 4.5491 -8.3981 -0.0426 19 6 5.5328 -9.3644 -0.0355 20 6 6.3807 -9.4855 1.0532 21 17 7.6214 -10.6997 1.0518 22 6 6.2428 -8.6414 2.1426 23 6 5.2598 -7.6743 2.1491 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8713 -3.6047 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 2.6181 -6.9855 -0.7640 30 1 3.8916 -8.3015 -0.8939 31 1 5.6453 -10.0252 -0.8823 32 1 6.9072 -8.7402 2.9884 33 1 5.1535 -7.0164 2.9990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095987708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:54 Heat of formation + Delta-G solvation = -122.775429 kcal Electronic energy + Delta-G solvation = -21194.597838 eV Core-core repulsion = 17565.174914 eV Total energy + Delta-G solvation = -3629.422924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68792 -39.71620 -38.31500 -37.48496 -37.26177 -35.99246 -35.80021 -33.18716 -32.18793 -32.04619 -27.65914 -25.70978 -23.97065 -23.61444 -22.47701 -20.84421 -19.80322 -19.16899 -18.38118 -17.86196 -17.38122 -16.79400 -16.70571 -16.52107 -16.29846 -16.08639 -15.30879 -15.21019 -14.66675 -14.51906 -14.46115 -13.84452 -13.75789 -13.43867 -13.39622 -13.27936 -12.93321 -12.85449 -12.63760 -12.58901 -12.35382 -12.25175 -12.07679 -11.88400 -11.78309 -11.58224 -11.10108 -10.64845 -10.20280 -9.93996 -8.27302 -6.41388 -1.05317 -0.59752 0.18140 0.99658 1.19129 1.37959 1.40526 1.44306 1.52441 2.36617 2.48377 2.59654 2.92700 3.06181 3.16940 3.63473 3.72918 3.79765 3.99174 4.02981 4.09389 4.18967 4.48934 4.68658 4.85539 4.93335 5.04036 5.11639 5.22367 5.24028 5.52830 5.62738 5.66404 6.03609 6.29979 6.71046 7.28526 8.84885 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.002855 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.154099 B = 9805.640394 C =10538.967197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.578 4.578 11 S 2.602 3.398 12 O -0.966 6.966 13 O -0.976 6.976 14 N -1.034 6.034 15 C 0.581 3.419 16 O -0.523 6.523 17 C -0.152 4.152 18 C -0.060 4.060 19 C -0.115 4.115 20 C -0.010 4.010 21 Cl -0.056 7.056 22 C -0.118 4.118 23 C -0.050 4.050 24 H 0.268 0.732 25 H 0.017 0.983 26 H 0.005 0.995 27 H 0.135 0.865 28 H 0.153 0.847 29 H 0.448 0.552 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.548 -22.602 -1.393 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.711 4.711 11 S 2.700 3.300 12 O -0.956 6.956 13 O -0.966 6.966 14 N -0.801 5.801 15 C 0.370 3.630 16 O -0.398 6.398 17 C -0.157 4.157 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.037 4.037 21 Cl -0.027 7.027 22 C -0.137 4.137 23 C -0.069 4.069 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.024 0.976 27 H 0.153 0.847 28 H 0.171 0.829 29 H 0.289 0.711 30 H 0.187 0.813 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.475 -22.311 -0.708 27.162 hybrid contribution 0.523 0.924 -0.180 1.076 sum 15.998 -21.387 -0.887 26.723 Atomic orbital electron populations 1.70085 1.08008 1.28489 1.50610 1.26108 0.95896 1.03834 0.94250 0.85355 0.78164 0.77242 0.79451 1.18483 1.20783 1.19107 1.21453 0.93953 0.90738 1.51949 0.90760 1.18830 0.93448 0.92625 0.96737 1.30241 1.12893 1.15393 1.12607 1.05375 0.74585 0.76777 0.73219 1.93570 1.71179 1.85470 1.45373 1.93554 1.71677 1.84869 1.46476 1.54800 1.48049 1.49605 1.27661 1.18655 0.80537 0.83482 0.80286 1.90984 1.70518 1.44475 1.33835 1.19805 0.98300 0.98933 0.98702 1.21626 0.97086 0.92086 0.97039 1.21330 0.94122 0.99317 0.98535 1.21474 0.92760 0.92850 0.96622 1.98409 1.51992 1.53801 1.98507 1.21239 0.99125 0.94499 0.98819 1.21403 0.91872 0.96347 0.97280 0.92278 0.96501 0.97630 0.84691 0.82865 0.71079 0.81335 0.81288 0.82242 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 3 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.20 4.98 29.85 0.15 1.35 16 10 C -0.58 -22.62 5.82 71.98 0.42 -22.20 16 11 S 2.60 92.27 5.11 -56.49 -0.29 91.98 16 12 O -0.97 -36.61 18.08 -127.65 -2.31 -38.91 16 13 O -0.98 -43.04 17.04 -120.72 -2.06 -45.09 16 14 N -1.03 -24.11 5.55 -175.64 -0.98 -25.09 16 15 C 0.58 14.84 7.51 86.77 0.65 15.49 16 16 O -0.52 -17.94 14.45 12.47 0.18 -17.76 16 17 C -0.15 -2.74 5.87 -20.09 -0.12 -2.86 16 18 C -0.06 -0.67 9.54 22.52 0.21 -0.45 16 19 C -0.11 -1.09 9.81 22.25 0.22 -0.87 16 20 C -0.01 -0.12 6.33 22.40 0.14 0.02 16 21 Cl -0.06 -0.63 28.95 -2.72 -0.08 -0.71 16 22 C -0.12 -1.51 9.81 22.25 0.22 -1.30 16 23 C -0.05 -0.84 9.59 22.52 0.22 -0.63 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.13 5.21 7.19 -2.39 -0.02 5.19 16 28 H 0.15 4.91 8.14 -2.39 -0.02 4.90 16 29 H 0.45 6.03 6.82 -96.75 -0.66 5.37 16 30 H 0.17 0.78 6.40 -2.91 -0.02 0.76 16 31 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.15 2.57 7.65 -2.91 -0.02 2.55 16 Total: -1.00 -80.25 321.81 0.09 -80.16 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.50 Total: 7.80 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 2.81 Total: -41.34 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -0.69 Total: -81.73 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -4.18 Total: -101.77 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 92.27 SS G_CDS: -0.29 Total: 91.98 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -80.25 0.09 -80.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095987708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.620 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds