Wall clock time and date at job start Tue Mar 31 2020 11:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47153 * 2 1 4 4 C 1.46497 * 120.00324 * 274.93655 * 3 2 1 5 5 C 1.50697 * 109.47556 * 262.42439 * 4 3 2 6 6 H 1.08008 * 119.99474 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00319 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00223 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00045 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47009 * 90.00193 * 9 7 5 11 11 H 1.48501 * 109.47214 * 209.99909 * 9 7 5 12 12 H 1.48496 * 109.47418 * 329.99985 * 9 7 5 13 13 C 1.34780 * 120.00206 * 94.94244 * 3 2 1 14 14 O 1.21721 * 119.99860 * 2.08498 * 13 3 2 15 15 C 1.46474 * 120.00181 * 182.09188 * 13 3 2 16 16 S 1.75828 * 125.46213 * 351.69214 * 15 13 3 17 17 C 1.70606 * 91.58186 * 180.02562 * 16 15 13 18 18 C 1.33783 * 110.98777 * 0.02562 * 17 16 15 19 19 C 1.36761 * 125.46079 * 171.69442 * 15 13 3 20 20 Br 1.89098 * 123.37383 * 359.97438 * 19 15 13 21 21 H 1.08999 * 109.47472 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.46979 * 60.00286 * 1 2 3 23 23 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47283 * 239.99631 * 2 1 3 25 25 H 1.09004 * 109.46768 * 120.00163 * 2 1 3 26 26 H 1.09005 * 109.46879 * 22.41737 * 4 3 2 27 27 H 1.08996 * 109.47191 * 142.42087 * 4 3 2 28 28 H 0.97001 * 120.00423 * 179.97438 * 8 7 5 29 29 H 1.07996 * 124.50882 * 179.73237 * 17 16 15 30 30 H 1.08000 * 122.44664 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1595 2.1082 -1.2640 5 6 3.5925 2.0401 -1.7253 6 1 4.3250 1.5087 -1.1357 7 6 3.9686 2.6561 -2.9000 8 7 5.2193 2.5970 -3.3024 9 14 2.7017 3.5745 -3.9202 10 1 2.6489 4.9931 -3.4838 11 1 3.0813 3.5118 -5.3545 12 1 1.3679 2.9491 -3.7333 13 6 2.3377 1.9830 1.1629 14 8 2.2567 1.3668 2.2094 15 6 2.7823 3.3787 1.1673 16 16 3.1485 4.3371 -0.2606 17 6 3.5415 5.6955 0.6940 18 6 3.4001 5.4231 1.9961 19 6 2.9791 4.1452 2.2827 20 35 2.7016 3.5114 4.0426 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.5136 1.6566 -2.0170 27 1 1.8740 3.1499 -1.1178 28 1 5.4839 3.0301 -4.1291 29 1 3.8662 6.6470 0.2998 30 1 3.6011 6.1534 2.7660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:02 Heat of formation + Delta-G solvation = 9.900829 kcal Electronic energy + Delta-G solvation = -17080.113945 eV Core-core repulsion = 14242.016609 eV Total energy + Delta-G solvation = -2838.097336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.27517 -37.12149 -35.32182 -33.06397 -31.26304 -30.55188 -28.55077 -27.86167 -24.29149 -22.98472 -22.57330 -19.80724 -18.29984 -17.35062 -17.27023 -15.70993 -15.32369 -14.87161 -14.65837 -14.01237 -13.35785 -13.13756 -12.90252 -12.81877 -12.61030 -12.39735 -11.94803 -11.85308 -11.67835 -11.15403 -10.96943 -10.61024 -10.45181 -10.24305 -9.91968 -9.90465 -9.58598 -9.05834 -8.87062 -8.30688 -7.96878 -7.66524 -6.48460 -4.45655 1.02425 1.75317 2.52040 2.75784 2.84850 2.98905 3.07542 3.12084 3.68897 3.81093 4.01704 4.81716 5.15682 5.47452 5.57690 5.66030 5.71293 5.75640 6.08265 6.12979 6.18602 6.31599 6.35550 6.51995 6.54011 6.60186 7.07746 7.18889 7.91536 8.14875 8.58775 8.81686 9.06026 10.62207 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.006985 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.998303 B = 4007.680352 C = 5105.522384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.591 5.591 4 C 0.197 3.803 5 C -0.537 4.537 6 H 0.089 0.911 7 C 0.089 3.911 8 N -0.868 5.868 9 Si 0.845 3.155 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.257 1.257 13 C 0.586 3.414 14 O -0.535 6.535 15 C -0.258 4.258 16 S 0.402 5.598 17 C -0.324 4.324 18 C -0.140 4.140 19 C -0.056 4.056 20 Br -0.026 7.026 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.272 0.728 29 H 0.157 0.843 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 3.643 6.311 9.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.322 5.322 4 C 0.073 3.927 5 C -0.580 4.580 6 H 0.107 0.893 7 C -0.118 4.118 8 N -0.503 5.503 9 Si 0.669 3.331 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.181 1.181 13 C 0.374 3.626 14 O -0.415 6.415 15 C -0.382 4.382 16 S 0.678 5.322 17 C -0.462 4.462 18 C -0.171 4.171 19 C -0.153 4.153 20 Br 0.058 6.942 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.175 0.825 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.604 2.961 5.795 9.272 hybrid contribution -0.183 1.204 0.355 1.269 sum -6.787 4.166 6.150 10.062 Atomic orbital electron populations 1.22143 0.96656 1.01560 1.02005 1.21306 0.93403 0.82646 1.03280 1.47742 1.63831 1.13941 1.06675 1.20065 0.99141 0.90837 0.82642 1.21445 0.92865 1.35555 1.08091 0.89317 1.24838 0.95142 0.95301 0.96564 1.69861 1.16071 1.41728 1.22653 0.87258 0.82914 0.81585 0.81325 1.18648 1.19876 1.18078 1.16830 0.77350 0.84613 0.83847 1.90805 1.54783 1.64925 1.30956 1.24589 1.15340 1.00314 0.98000 1.85515 1.51599 0.93899 1.01203 1.26504 1.10059 1.08711 1.00973 1.19444 1.05924 0.95244 0.96535 1.20951 1.07688 0.95526 0.91137 1.96573 1.95587 1.89229 1.12798 0.92613 0.92714 0.92022 0.90298 0.90012 0.92980 0.95588 0.91732 0.82503 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.12 2.01 6.16 -4.05 -0.02 1.98 16 3 N -0.59 -12.02 2.48 -176.68 -0.44 -12.45 16 4 C 0.20 4.11 3.84 -5.20 -0.02 4.09 16 5 C -0.54 -12.94 7.52 -34.44 -0.26 -13.20 16 6 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 7 C 0.09 2.17 5.09 -17.82 -0.09 2.08 16 8 N -0.87 -22.96 13.96 55.43 0.77 -22.19 16 9 Si 0.84 17.54 26.80 -169.99 -4.56 12.98 16 10 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.26 -5.03 6.54 56.52 0.37 -4.66 16 13 C 0.59 12.72 7.55 -12.94 -0.10 12.62 16 14 O -0.53 -12.19 14.27 5.17 0.07 -12.12 16 15 C -0.26 -5.37 6.23 -36.80 -0.23 -5.60 16 16 S 0.40 7.84 15.23 -107.50 -1.64 6.21 16 17 C -0.32 -5.49 10.92 29.17 0.32 -5.17 16 18 C -0.14 -2.41 10.03 -41.39 -0.42 -2.83 16 19 C -0.06 -1.09 6.29 -40.36 -0.25 -1.34 16 20 Br -0.03 -0.47 31.73 -68.01 -2.16 -2.63 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 25 H 0.08 1.44 7.25 -51.93 -0.38 1.07 16 26 H 0.05 1.04 7.07 -51.93 -0.37 0.67 16 27 H 0.03 0.55 3.93 -22.32 -0.09 0.46 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 30 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 282.36 15.07 4.26 4.26 Total: -1.00 -26.84 282.36 -7.33 -34.18 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -2.96 Total: 1.15 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.69 Total: -9.39 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.34 Total: -34.64 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -4.56 Total: 12.98 kcal Atomic # 16 Polarization: 7.84 SS G_CDS: -1.64 Total: 6.21 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.16 Total: -2.63 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.84 -7.33 -34.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.079 kcal (2) G-P(sol) polarization free energy of solvation -26.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds