Wall clock time and date at job start Tue Mar 31 2020 11:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47153 * 2 1 4 4 C 1.46497 * 120.00324 * 274.93655 * 3 2 1 5 5 C 1.50697 * 109.47556 * 262.42439 * 4 3 2 6 6 H 1.08008 * 119.99474 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00319 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00223 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00045 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47009 * 90.00193 * 9 7 5 11 11 H 1.48501 * 109.47214 * 209.99909 * 9 7 5 12 12 H 1.48496 * 109.47418 * 329.99985 * 9 7 5 13 13 C 1.34780 * 120.00206 * 94.94244 * 3 2 1 14 14 O 1.21721 * 119.99860 * 2.08498 * 13 3 2 15 15 C 1.46474 * 120.00181 * 182.09188 * 13 3 2 16 16 S 1.75828 * 125.46213 * 351.69214 * 15 13 3 17 17 C 1.70606 * 91.58186 * 180.02562 * 16 15 13 18 18 C 1.33783 * 110.98777 * 0.02562 * 17 16 15 19 19 C 1.36761 * 125.46079 * 171.69442 * 15 13 3 20 20 Br 1.89098 * 123.37383 * 359.97438 * 19 15 13 21 21 H 1.08999 * 109.47472 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.46979 * 60.00286 * 1 2 3 23 23 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47283 * 239.99631 * 2 1 3 25 25 H 1.09004 * 109.46768 * 120.00163 * 2 1 3 26 26 H 1.09005 * 109.46879 * 22.41737 * 4 3 2 27 27 H 1.08996 * 109.47191 * 142.42087 * 4 3 2 28 28 H 0.97001 * 120.00423 * 179.97438 * 8 7 5 29 29 H 1.07996 * 124.50882 * 179.73237 * 17 16 15 30 30 H 1.08000 * 122.44664 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1595 2.1082 -1.2640 5 6 3.5925 2.0401 -1.7253 6 1 4.3250 1.5087 -1.1357 7 6 3.9686 2.6561 -2.9000 8 7 5.2193 2.5970 -3.3024 9 14 2.7017 3.5745 -3.9202 10 1 2.6489 4.9931 -3.4838 11 1 3.0813 3.5118 -5.3545 12 1 1.3679 2.9491 -3.7333 13 6 2.3377 1.9830 1.1629 14 8 2.2567 1.3668 2.2094 15 6 2.7823 3.3787 1.1673 16 16 3.1485 4.3371 -0.2606 17 6 3.5415 5.6955 0.6940 18 6 3.4001 5.4231 1.9961 19 6 2.9791 4.1452 2.2827 20 35 2.7016 3.5114 4.0426 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.5136 1.6566 -2.0170 27 1 1.8740 3.1499 -1.1178 28 1 5.4839 3.0301 -4.1291 29 1 3.8662 6.6470 0.2998 30 1 3.6011 6.1534 2.7660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:00 Heat of formation + Delta-G solvation = -5.335089 kcal Electronic energy + Delta-G solvation = -17080.774624 eV Core-core repulsion = 14242.016609 eV Total energy + Delta-G solvation = -2838.758015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.87682 -38.58620 -36.96065 -34.82392 -32.74834 -32.00074 -30.12904 -29.46136 -25.73151 -24.69760 -24.01072 -21.29654 -19.80136 -19.18256 -18.86742 -17.26062 -16.86879 -16.46648 -16.21003 -15.61456 -14.77919 -14.68549 -14.46844 -14.35934 -14.12782 -13.79433 -13.38615 -13.36316 -13.09861 -12.63677 -12.54430 -12.13463 -11.87022 -11.77563 -11.67917 -11.42849 -11.08708 -10.85558 -10.44282 -9.83654 -9.51553 -9.20981 -8.34126 -6.36890 -0.48426 0.24568 1.04992 1.32749 1.33955 1.39365 1.44792 1.50020 2.13329 2.21936 2.29939 2.99779 3.62802 4.14269 4.23941 4.32822 4.36757 4.42786 4.59191 4.71330 4.81412 4.90980 5.02584 5.11125 5.21937 5.27476 5.33300 5.65043 6.11507 6.45846 6.62658 7.14033 7.23943 8.80730 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.006985 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.998303 B = 4007.680352 C = 5105.522384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.202 3.798 5 C -0.536 4.536 6 H 0.037 0.963 7 C 0.049 3.951 8 N -0.921 5.921 9 Si 0.892 3.108 10 H -0.241 1.241 11 H -0.278 1.278 12 H -0.234 1.234 13 C 0.576 3.424 14 O -0.556 6.556 15 C -0.288 4.288 16 S 0.368 5.632 17 C -0.299 4.299 18 C -0.142 4.142 19 C -0.061 4.061 20 Br -0.016 7.016 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.273 0.727 29 H 0.193 0.807 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 5.265 6.279 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.325 5.325 4 C 0.078 3.922 5 C -0.577 4.577 6 H 0.056 0.944 7 C -0.154 4.154 8 N -0.558 5.558 9 Si 0.713 3.287 10 H -0.165 1.165 11 H -0.203 1.203 12 H -0.157 1.157 13 C 0.365 3.635 14 O -0.438 6.438 15 C -0.411 4.411 16 S 0.642 5.358 17 C -0.437 4.437 18 C -0.172 4.172 19 C -0.158 4.158 20 Br 0.068 6.932 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.210 0.790 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.235 4.554 5.761 11.034 hybrid contribution 0.386 0.718 0.529 0.971 sum -7.850 5.272 6.290 11.357 Atomic orbital electron populations 1.22046 0.93999 1.03393 1.01725 1.21527 0.95560 0.81230 1.03036 1.47884 1.63462 1.14911 1.06201 1.19991 0.97181 0.92019 0.83046 1.21309 0.93541 1.35066 1.07762 0.94433 1.25486 0.96667 0.95831 0.97406 1.69999 1.18484 1.43756 1.23538 0.86481 0.81400 0.81596 0.79220 1.16469 1.20335 1.15656 1.17107 0.77257 0.85199 0.83965 1.90771 1.55940 1.65588 1.31521 1.24659 1.17163 1.00356 0.98950 1.85386 1.53031 0.95428 1.01932 1.26731 1.07951 1.08797 1.00214 1.19760 1.05129 0.94860 0.97484 1.21368 1.06750 0.96295 0.91408 1.96573 1.95492 1.89432 1.11709 0.93723 0.92012 0.89165 0.89811 0.91006 0.91474 0.94190 0.91706 0.79027 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 10.24 71.98 0.74 -3.43 16 2 C 0.11 3.70 6.16 86.38 0.53 4.23 16 3 N -0.59 -24.17 2.48 -831.11 -2.06 -26.23 16 4 C 0.20 8.27 3.84 85.63 0.33 8.60 16 5 C -0.54 -26.28 7.52 25.60 0.19 -26.08 16 6 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 7 C 0.05 2.40 5.09 84.65 0.43 2.83 16 8 N -0.92 -49.92 13.96 21.44 0.30 -49.62 16 9 Si 0.89 34.74 26.80 68.60 1.84 36.57 16 10 H -0.24 -8.55 7.11 99.48 0.71 -7.84 16 11 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.23 -8.18 6.54 99.48 0.65 -7.53 16 13 C 0.58 25.16 7.55 86.39 0.65 25.81 16 14 O -0.56 -25.61 14.27 -4.41 -0.06 -25.67 16 15 C -0.29 -11.81 6.23 24.07 0.15 -11.66 16 16 S 0.37 13.86 15.23 -56.49 -0.86 13.00 16 17 C -0.30 -9.17 10.92 66.81 0.73 -8.44 16 18 C -0.14 -4.47 10.03 21.10 0.21 -4.26 16 19 C -0.06 -2.25 6.29 21.76 0.14 -2.11 16 20 Br -0.02 -0.57 31.73 -20.37 -0.65 -1.21 16 21 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 25 H 0.07 2.57 7.25 -2.38 -0.02 2.55 16 26 H 0.07 2.55 7.07 -2.38 -0.02 2.54 16 27 H 0.04 1.61 3.93 -21.22 -0.08 1.52 16 28 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -59.09 282.36 3.64 -55.45 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.03 Total: 12.22 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.10 Total: -14.51 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.76 Total: -75.85 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 1.84 Total: 36.57 kcal Atomic # 16 Polarization: 13.86 SS G_CDS: -0.86 Total: 13.00 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.65 Total: -1.21 kcal Total: -59.09 3.64 -55.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.114 kcal (2) G-P(sol) polarization free energy of solvation -59.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds