Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99701 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99265 * 3 2 1 5 5 H 1.48496 * 109.47291 * 29.99724 * 3 2 1 6 6 H 1.48507 * 109.46995 * 149.99609 * 3 2 1 7 7 C 1.37874 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00522 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47425 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47279 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.42098 * 109.46777 * 289.05364 * 12 11 10 14 14 C 1.76202 * 103.00384 * 180.02562 * 12 11 10 15 15 C 1.38231 * 119.60323 * 270.28233 * 14 12 11 16 16 C 1.38613 * 119.16887 * 180.27611 * 15 14 12 17 17 C 1.38761 * 118.41251 * 359.44852 * 16 15 14 18 18 Br 1.89094 * 120.42902 * 180.25861 * 17 16 15 19 19 C 1.38277 * 119.14015 * 0.27812 * 17 16 15 20 20 N 1.31851 * 119.60934 * 89.99639 * 14 12 11 21 21 H 0.97006 * 120.00086 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47495 * 59.99198 * 9 7 2 23 23 H 1.09005 * 109.46891 * 300.00008 * 9 7 2 24 24 H 1.09002 * 109.46667 * 59.99929 * 10 9 7 25 25 H 1.09001 * 109.46914 * 299.99944 * 10 9 7 26 26 H 1.09001 * 109.47512 * 59.99623 * 11 10 9 27 27 H 1.09001 * 109.47157 * 299.99863 * 11 10 9 28 28 H 1.07999 * 120.42006 * 0.02562 * 15 14 12 29 29 H 1.08002 * 120.79769 * 179.72939 * 16 15 14 30 30 H 1.07998 * 119.62449 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 16 2.6591 -6.3658 0.0019 13 8 3.2993 -6.4422 -1.2643 14 6 1.6118 -7.7828 0.0019 15 6 1.2007 -8.3282 1.2037 16 6 0.3815 -9.4463 1.1931 17 6 -0.0050 -9.9701 -0.0323 18 35 -1.1275 -11.4897 -0.1132 19 6 0.4416 -9.3667 -1.1935 20 7 1.2249 -8.3069 -1.1445 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5566 0.8903 24 1 2.8719 -3.6042 0.8906 25 1 2.8719 -3.6043 -0.8895 26 1 0.8533 -5.0451 -0.8885 27 1 0.8540 -5.0445 0.8914 28 1 1.5170 -7.8910 2.1392 29 1 0.0483 -9.8964 2.1166 30 1 0.1452 -9.7676 -2.1515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108114223.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = -13.792311 kcal Electronic energy + Delta-G solvation = -15478.297794 eV Core-core repulsion = 12639.173047 eV Total energy + Delta-G solvation = -2839.124748 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.36049 -35.58163 -34.46630 -33.48008 -32.38598 -32.04211 -29.93466 -27.53363 -24.23418 -23.83421 -23.27548 -20.40717 -18.51273 -16.98493 -16.86549 -16.30269 -15.83544 -15.02711 -14.68983 -14.63007 -14.42334 -13.98461 -13.69636 -12.71646 -12.52622 -12.29455 -12.03870 -11.72107 -11.45087 -10.99802 -10.88708 -10.81671 -10.71131 -10.40063 -10.18479 -9.84258 -9.79684 -9.47106 -9.32803 -9.11310 -8.37178 -8.26889 -6.01861 -4.04821 0.21250 0.81123 1.05062 1.78401 2.62871 3.28225 3.31823 3.38006 3.41014 3.82781 4.26007 4.35271 4.44878 4.58339 4.71788 5.16822 5.31698 5.33871 5.43366 5.50366 5.56034 6.00719 6.14258 6.46841 6.65534 7.00469 7.43693 7.63996 7.76231 7.97247 8.38359 9.02195 9.59588 11.09350 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.002485 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.486610 B =11266.036077 C =11735.409324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.437 4.437 12 S 1.332 4.668 13 O -0.826 6.826 14 C -0.216 4.216 15 C -0.103 4.103 16 C -0.060 4.060 17 C -0.124 4.124 18 Br -0.034 7.034 19 C 0.114 3.886 20 N -0.413 5.413 21 H 0.261 0.739 22 H 0.015 0.985 23 H 0.019 0.981 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 -25.660 6.946 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.576 4.576 12 S 1.527 4.473 13 O -0.821 6.821 14 C -0.445 4.445 15 C -0.125 4.125 16 C -0.089 4.089 17 C -0.206 4.206 18 Br 0.050 6.950 19 C -0.048 4.048 20 N -0.122 5.122 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.179 0.821 29 H 0.168 0.832 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.216 -25.769 6.109 26.484 hybrid contribution -1.338 0.655 -0.984 1.785 sum -1.554 -25.114 5.125 25.678 Atomic orbital electron populations 1.69966 1.06103 1.26660 1.50781 1.25030 0.94857 0.99326 0.95254 0.86580 0.79846 0.83351 0.78158 1.20677 1.21216 1.19748 1.21265 0.93153 0.90996 1.50737 0.92478 1.19087 0.93783 0.90791 0.97448 1.21341 0.99072 0.91769 1.01111 1.27764 1.11923 1.10257 1.07688 1.69860 0.85878 0.82014 1.09518 1.93147 1.62809 1.82284 1.43863 1.31122 1.07613 1.14183 0.91621 1.22027 0.95931 0.95163 0.99366 1.21707 0.95113 0.95014 0.97064 1.23162 1.02016 0.97590 0.97830 1.96772 1.63753 1.35333 1.99111 1.23171 0.92680 0.91559 0.97364 1.68323 1.07348 1.08292 1.28237 0.92972 0.96669 0.96220 0.91943 0.92696 0.89400 0.86891 0.82135 0.83201 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.84 5.16 -26.73 -0.14 -1.98 16 11 C -0.44 -6.88 5.88 37.16 0.22 -6.66 16 12 S 1.33 16.97 13.59 -107.50 -1.46 15.51 16 13 O -0.83 -16.08 17.58 -35.23 -0.62 -16.70 16 14 C -0.22 -2.71 6.48 -17.55 -0.11 -2.83 16 15 C -0.10 -0.88 9.80 -39.45 -0.39 -1.27 16 16 C -0.06 -0.51 9.94 -39.25 -0.39 -0.90 16 17 C -0.12 -1.25 6.25 -39.37 -0.25 -1.50 16 18 Br -0.03 -0.29 33.74 -68.01 -2.29 -2.58 16 19 C 0.11 1.40 10.95 -17.52 -0.19 1.21 16 20 N -0.41 -6.28 9.96 -12.43 -0.12 -6.41 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 27 H 0.11 1.47 8.14 -51.92 -0.42 1.05 16 28 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 29 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 302.08 15.07 4.55 4.55 Total: -1.00 -37.79 302.08 -9.37 -47.16 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: -3.35 Total: -5.06 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -1.80 Total: -26.85 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.61 Total: -32.57 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.62 Total: -16.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 16.97 SS G_CDS: -1.46 Total: 15.51 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.79 -9.37 -47.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108114223.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.367 kcal (2) G-P(sol) polarization free energy of solvation -37.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds