Wall clock time and date at job start Tue Mar 31 2020 11:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99701 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99265 * 3 2 1 5 5 H 1.48496 * 109.47291 * 29.99724 * 3 2 1 6 6 H 1.48507 * 109.46995 * 149.99609 * 3 2 1 7 7 C 1.37874 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00522 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47425 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47279 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.42098 * 109.46777 * 289.05364 * 12 11 10 14 14 C 1.76202 * 103.00384 * 180.02562 * 12 11 10 15 15 C 1.38231 * 119.60323 * 270.28233 * 14 12 11 16 16 C 1.38613 * 119.16887 * 180.27611 * 15 14 12 17 17 C 1.38761 * 118.41251 * 359.44852 * 16 15 14 18 18 Br 1.89094 * 120.42902 * 180.25861 * 17 16 15 19 19 C 1.38277 * 119.14015 * 0.27812 * 17 16 15 20 20 N 1.31851 * 119.60934 * 89.99639 * 14 12 11 21 21 H 0.97006 * 120.00086 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47495 * 59.99198 * 9 7 2 23 23 H 1.09005 * 109.46891 * 300.00008 * 9 7 2 24 24 H 1.09002 * 109.46667 * 59.99929 * 10 9 7 25 25 H 1.09001 * 109.46914 * 299.99944 * 10 9 7 26 26 H 1.09001 * 109.47512 * 59.99623 * 11 10 9 27 27 H 1.09001 * 109.47157 * 299.99863 * 11 10 9 28 28 H 1.07999 * 120.42006 * 0.02562 * 15 14 12 29 29 H 1.08002 * 120.79769 * 179.72939 * 16 15 14 30 30 H 1.07998 * 119.62449 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 16 2.6591 -6.3658 0.0019 13 8 3.2993 -6.4422 -1.2643 14 6 1.6118 -7.7828 0.0019 15 6 1.2007 -8.3282 1.2037 16 6 0.3815 -9.4463 1.1931 17 6 -0.0050 -9.9701 -0.0323 18 35 -1.1275 -11.4897 -0.1132 19 6 0.4416 -9.3667 -1.1935 20 7 1.2249 -8.3069 -1.1445 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5566 0.8903 24 1 2.8719 -3.6042 0.8906 25 1 2.8719 -3.6043 -0.8895 26 1 0.8533 -5.0451 -0.8885 27 1 0.8540 -5.0445 0.8914 28 1 1.5170 -7.8910 2.1392 29 1 0.0483 -9.8964 2.1166 30 1 0.1452 -9.7676 -2.1515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108114223.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:39 Heat of formation + Delta-G solvation = -41.195792 kcal Electronic energy + Delta-G solvation = -15479.486098 eV Core-core repulsion = 12639.173047 eV Total energy + Delta-G solvation = -2840.313052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19330 -36.93218 -36.30369 -34.29212 -34.01698 -33.16180 -30.72079 -29.40286 -25.48672 -24.97726 -24.45454 -22.12389 -19.47175 -18.53280 -17.85574 -17.76290 -16.71326 -16.47649 -16.20605 -15.99893 -15.51093 -15.10144 -14.49334 -14.35085 -14.02873 -13.80348 -13.36663 -13.06052 -12.70146 -12.57088 -12.55344 -12.44708 -11.98660 -11.62557 -11.57676 -11.32288 -11.13758 -10.93001 -10.55718 -10.53888 -10.24455 -9.50845 -8.19744 -6.31246 -0.63875 0.06077 0.29575 0.77004 1.41361 1.42849 1.54087 1.58765 2.39896 2.42050 2.79873 3.13566 3.46617 3.64870 3.83445 3.97161 4.07143 4.17853 4.53585 4.59725 4.61517 4.77402 4.87173 5.15797 5.21261 5.29785 5.51546 5.71272 5.84773 6.23714 6.57792 6.86306 7.38395 8.91960 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.002485 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.486610 B =11266.036077 C =11735.409324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.088 4.088 11 C -0.446 4.446 12 S 1.428 4.572 13 O -0.898 6.898 14 C -0.250 4.250 15 C -0.081 4.081 16 C -0.057 4.057 17 C -0.123 4.123 18 Br -0.018 7.018 19 C 0.093 3.907 20 N -0.466 5.466 21 H 0.263 0.737 22 H -0.026 1.026 23 H 0.009 0.991 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.145 0.855 28 H 0.216 0.784 29 H 0.189 0.811 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -26.708 9.605 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.583 4.583 12 S 1.624 4.376 13 O -0.894 6.894 14 C -0.480 4.480 15 C -0.102 4.102 16 C -0.085 4.085 17 C -0.205 4.205 18 Br 0.067 6.933 19 C -0.070 4.070 20 N -0.176 5.176 21 H 0.072 0.928 22 H -0.008 1.008 23 H 0.028 0.972 24 H 0.117 0.883 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.163 0.837 28 H 0.233 0.767 29 H 0.207 0.793 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.411 -26.788 8.769 28.189 hybrid contribution -1.654 0.780 -1.781 2.552 sum -1.242 -26.007 6.988 26.958 Atomic orbital electron populations 1.70102 1.07887 1.27771 1.51808 1.26009 0.95774 1.03484 0.94732 0.85447 0.79007 0.78368 0.78250 1.20512 1.20567 1.17997 1.21773 0.93841 0.92333 1.50395 0.91688 1.19020 0.94368 0.92859 0.94906 1.21154 0.98043 0.91686 1.01840 1.27817 1.12566 1.10307 1.07578 1.68873 0.82866 0.79775 1.06081 1.92998 1.65664 1.83614 1.47109 1.30801 1.09625 1.14638 0.92916 1.22632 0.93666 0.94195 0.99721 1.22256 0.94034 0.94503 0.97717 1.23338 1.01486 0.97704 0.97971 1.96794 1.63121 1.34252 1.99140 1.23257 0.93317 0.91732 0.98681 1.68164 1.09115 1.10084 1.30251 0.92805 1.00758 0.97234 0.88345 0.94745 0.92824 0.83733 0.76682 0.79344 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.50 5.16 30.59 0.16 -3.34 16 11 C -0.45 -13.98 5.88 71.98 0.42 -13.56 16 12 S 1.43 35.01 13.59 -56.49 -0.77 34.25 16 13 O -0.90 -35.78 17.58 -148.98 -2.62 -38.40 16 14 C -0.25 -5.89 6.48 84.69 0.55 -5.34 16 15 C -0.08 -1.05 9.80 22.36 0.22 -0.83 16 16 C -0.06 -0.73 9.94 22.48 0.22 -0.50 16 17 C -0.12 -2.22 6.25 22.40 0.14 -2.08 16 18 Br -0.02 -0.27 33.74 -20.37 -0.69 -0.95 16 19 C 0.09 2.25 10.95 84.70 0.93 3.18 16 20 N -0.47 -14.28 9.96 -193.25 -1.92 -16.20 16 21 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 22 H -0.03 -1.56 8.14 -2.39 -0.02 -1.57 16 23 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 24 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 29 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -86.83 302.08 0.94 -85.90 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: 1.14 Total: -2.39 kcal Atomic # 6 Polarization: -54.89 SS G_CDS: 3.48 Total: -51.41 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.64 Total: -73.25 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -2.62 Total: -38.40 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 35.01 SS G_CDS: -0.77 Total: 34.25 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.69 Total: -0.95 kcal Total: -86.83 0.94 -85.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108114223.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.702 kcal (2) G-P(sol) polarization free energy of solvation -86.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds