Wall clock time and date at job start Tue Mar 31 2020 11:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 H 1.09002 * 109.46667 * 55.00783 * 3 2 1 5 5 C 1.50699 * 109.46944 * 175.00268 * 3 2 1 6 6 H 1.08007 * 120.00264 * 120.00458 * 5 3 2 7 7 C 1.37881 * 120.00302 * 300.00080 * 5 3 2 8 8 N 1.31509 * 120.00028 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99724 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47502 * 89.99967 * 9 7 5 11 11 H 1.48509 * 109.47220 * 210.00029 * 9 7 5 12 12 H 1.48501 * 109.47082 * 329.99516 * 9 7 5 13 13 N 1.46496 * 109.47554 * 295.00154 * 3 2 1 14 14 C 1.34777 * 119.99613 * 84.99645 * 13 3 2 15 15 O 1.21713 * 120.00383 * 0.02562 * 14 13 3 16 16 C 1.46476 * 120.00015 * 179.97438 * 14 13 3 17 17 S 1.75830 * 125.46101 * 0.03161 * 16 14 13 18 18 C 1.70606 * 91.58354 * 179.97438 * 17 16 14 19 19 C 1.33785 * 110.98749 * 359.97438 * 18 17 16 20 20 C 1.36763 * 125.46193 * 179.71796 * 16 14 13 21 21 Br 1.89098 * 123.37527 * 359.97213 * 20 16 14 22 22 H 1.09006 * 109.46865 * 299.99287 * 1 2 3 23 23 H 1.08997 * 109.47670 * 59.99434 * 1 2 3 24 24 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46865 * 240.00713 * 2 1 3 26 26 H 1.08997 * 109.47670 * 120.00566 * 2 1 3 27 27 H 0.97003 * 120.00120 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00516 * 265.00630 * 13 3 2 29 29 H 1.08001 * 124.51013 * 179.97438 * 18 17 16 30 30 H 1.08002 * 122.44887 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8805 1.3361 9 14 3.0965 0.1088 2.5699 10 1 2.8756 -1.3273 2.2632 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8073 2.6387 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3422 2.6325 -0.4306 16 6 0.0476 3.3199 -2.6181 17 16 1.0526 3.4502 -4.0550 18 6 -0.1688 4.3000 -4.8898 19 6 -1.2509 4.4628 -4.1202 20 6 -1.1560 3.9234 -2.8581 21 35 -2.5489 4.0105 -1.5822 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8771 0.4820 2.1126 28 1 2.2717 2.1233 -1.9977 29 1 -0.0802 4.6588 -5.9046 30 1 -2.1358 4.9766 -4.4657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108657507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:44 Heat of formation + Delta-G solvation = -14.423896 kcal Electronic energy + Delta-G solvation = -16683.000688 eV Core-core repulsion = 13843.848553 eV Total energy + Delta-G solvation = -2839.152135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91030 -38.77413 -36.99847 -34.42526 -33.40531 -32.20897 -30.51698 -29.22156 -25.78504 -24.56213 -23.11327 -21.53348 -20.38599 -19.75860 -18.44766 -17.56925 -16.90383 -16.62025 -16.32324 -15.65562 -15.15925 -14.72523 -14.58348 -14.08237 -13.95251 -13.70175 -13.60168 -13.39934 -12.94504 -12.77207 -12.41684 -12.09662 -11.86219 -11.78931 -11.53680 -11.28679 -11.24762 -10.85985 -10.44580 -10.01267 -9.72290 -9.50418 -8.38017 -6.43682 -0.66898 0.04634 0.74142 1.13374 1.21919 1.27599 1.36071 1.45767 2.16402 2.26223 2.32785 2.97962 3.79775 4.05009 4.17346 4.23763 4.32458 4.46921 4.69225 4.83458 4.95655 5.00481 5.04014 5.11865 5.23465 5.38085 5.51764 5.59592 6.12303 6.56694 6.76659 7.16979 7.33910 8.77012 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.005198 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.969477 B = 5385.648050 C = 6337.833563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.253 3.747 4 H 0.027 0.973 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.567 3.433 15 O -0.541 6.541 16 C -0.275 4.275 17 S 0.280 5.720 18 C -0.208 4.208 19 C -0.141 4.141 20 C -0.049 4.049 21 Br -0.015 7.015 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.270 0.730 28 H 0.400 0.600 29 H 0.217 0.783 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 6.422 -14.815 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.045 0.955 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.761 3.239 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.353 3.647 15 O -0.421 6.421 16 C -0.399 4.399 17 S 0.546 5.454 18 C -0.346 4.346 19 C -0.171 4.171 20 C -0.146 4.146 21 Br 0.070 6.930 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.235 0.765 29 H 0.234 0.766 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.252 5.898 -13.956 20.801 hybrid contribution -0.798 0.130 0.711 1.077 sum -15.050 6.028 -13.244 20.935 Atomic orbital electron populations 1.21755 0.95153 1.00549 1.01624 1.22210 0.95858 0.98325 1.01142 1.18831 0.93401 0.89683 0.83261 0.95502 1.21252 0.90158 1.38755 1.07080 0.92492 1.25501 0.95705 0.95797 0.99717 1.69966 1.10216 1.46010 1.30856 0.86074 0.79410 0.80027 0.78383 1.18476 1.22096 1.18396 1.45898 1.15006 1.56354 1.17337 1.17215 0.82299 0.78680 0.86492 1.90859 1.51465 1.59939 1.39843 1.24668 1.00805 1.12860 1.01535 1.83204 1.14531 1.48320 0.99306 1.25783 0.97226 1.04788 1.06851 1.19989 1.02256 1.04148 0.90744 1.21603 0.93545 1.02802 0.96614 1.96714 1.42791 1.97238 1.56255 0.94200 0.92979 0.92319 0.91290 0.93595 0.92044 0.76549 0.76623 0.80775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.51 71.98 0.61 -4.60 16 2 C -0.14 -5.91 5.11 30.59 0.16 -5.76 16 3 C 0.25 11.94 1.83 44.25 0.08 12.02 16 4 H 0.03 1.42 6.63 -2.39 -0.02 1.41 16 5 C -0.53 -29.02 9.31 25.60 0.24 -28.78 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.26 16 7 C 0.03 1.85 5.45 84.66 0.46 2.31 16 8 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 9 Si 0.93 44.68 24.41 68.60 1.67 46.35 16 10 H -0.26 -11.65 6.83 99.48 0.68 -10.97 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 13 N -0.70 -27.85 5.02 -450.27 -2.26 -30.11 16 14 C 0.57 21.71 6.34 86.39 0.55 22.25 16 15 O -0.54 -23.49 11.85 -4.39 -0.05 -23.54 16 16 C -0.28 -8.25 6.45 24.07 0.16 -8.09 16 17 S 0.28 5.62 22.15 -56.49 -1.25 4.37 16 18 C -0.21 -3.03 10.92 66.81 0.73 -2.30 16 19 C -0.14 -2.63 10.03 21.10 0.21 -2.42 16 20 C -0.05 -1.31 6.29 21.77 0.14 -1.18 16 21 Br -0.01 -0.43 31.69 -20.37 -0.65 -1.08 16 22 H 0.04 1.66 7.84 -2.38 -0.02 1.64 16 23 H 0.05 2.03 5.64 -2.39 -0.01 2.01 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 26 H 0.05 2.07 3.21 -2.39 -0.01 2.06 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.40 14.26 7.65 -92.71 -0.71 13.55 16 29 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -66.54 279.46 1.49 -65.05 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.39 Total: 10.79 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 3.33 Total: -16.54 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.96 Total: -85.40 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.67 Total: 46.35 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.25 Total: 4.37 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.65 Total: -1.08 kcal Total: -66.54 1.49 -65.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108657507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.628 kcal (2) G-P(sol) polarization free energy of solvation -66.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds