Wall clock time and date at job start Tue Mar 31 2020 11:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21718 * 119.99811 * 359.97438 * 14 13 3 16 16 C 1.46477 * 120.00504 * 180.02562 * 14 13 3 17 17 S 1.75825 * 125.46084 * 0.02562 * 16 14 13 18 18 C 1.70610 * 91.58073 * 179.97438 * 17 16 14 19 19 C 1.33769 * 110.98927 * 359.97438 * 18 17 16 20 20 C 1.36756 * 125.45958 * 179.71745 * 16 14 13 21 21 Br 1.89104 * 123.37639 * 359.97438 * 20 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 29 29 H 1.07999 * 124.50174 * 180.02562 * 18 17 16 30 30 H 1.07998 * 122.45486 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6327 0.4307 16 6 0.0478 3.3198 2.6183 17 16 1.0532 3.4512 4.0547 18 6 -0.1680 4.3015 4.8893 19 6 -1.2498 4.4646 4.1197 20 6 -1.1517 3.9328 2.8546 21 35 -2.5376 4.0364 1.5722 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0604 -2.9502 28 1 2.2719 2.1232 1.9977 29 1 -0.0789 4.6610 5.9038 30 1 -2.1343 4.9794 4.4647 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108657510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:46 Heat of formation + Delta-G solvation = -2.291167 kcal Electronic energy + Delta-G solvation = -16598.889597 eV Core-core repulsion = 13760.263577 eV Total energy + Delta-G solvation = -2838.626021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.25861 -37.57031 -35.01787 -32.45015 -31.25830 -30.94877 -29.13754 -26.94078 -24.58283 -23.05959 -21.33947 -19.51893 -18.98710 -18.41545 -16.50252 -15.76027 -15.35898 -14.86968 -14.75024 -14.12534 -13.42560 -13.13623 -12.99067 -12.67000 -12.42695 -11.96670 -11.52025 -11.25474 -11.13832 -10.99159 -10.83383 -10.66896 -10.37594 -10.20665 -10.08016 -9.60989 -9.09041 -8.91069 -8.84558 -8.51159 -8.49099 -7.86628 -6.13517 -4.23263 0.44699 1.12772 1.67721 2.21897 2.25616 3.25077 3.30627 3.31467 3.74573 3.94060 4.35471 4.83953 5.10763 5.17957 5.34268 5.63578 5.90346 5.95913 6.40566 6.47583 6.66804 7.04823 7.19303 7.32722 7.39687 7.59858 7.69564 7.87708 8.15811 8.56701 8.73351 9.00978 9.43556 10.91772 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.004767 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.095331 B = 5871.813254 C = 6746.105330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.563 3.437 15 O -0.508 6.508 16 C -0.217 4.217 17 S 0.237 5.763 18 C -0.244 4.244 19 C -0.126 4.126 20 C -0.056 4.056 21 Br 0.001 6.999 22 H 0.023 0.977 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.100 0.900 27 H 0.265 0.735 28 H 0.384 0.616 29 H 0.172 0.828 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 7.221 13.767 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.345 3.655 15 O -0.386 6.386 16 C -0.341 4.341 17 S 0.503 5.497 18 C -0.382 4.382 19 C -0.158 4.158 20 C -0.151 4.151 21 Br 0.086 6.914 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.217 0.783 29 H 0.190 0.810 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.047 6.641 12.781 16.499 hybrid contribution 0.116 0.524 0.418 0.680 sum -7.931 7.165 13.198 16.984 Atomic orbital electron populations 1.21846 0.98198 0.98147 1.01346 1.21944 0.92722 0.99605 1.02356 1.18852 0.94335 0.89232 0.80455 0.92898 1.21171 0.90562 1.39328 1.06427 0.92134 1.24868 0.98614 0.94724 0.95322 1.69883 1.35246 1.37400 1.09285 0.86513 0.84813 0.78337 0.77481 1.20140 1.21105 1.20162 1.46453 1.13785 1.55771 1.18776 1.16839 0.83589 0.79765 0.85284 1.90897 1.50762 1.58807 1.38094 1.25152 0.98670 1.09226 1.01017 1.83202 1.15360 1.49121 1.02027 1.25198 0.99133 1.08214 1.05680 1.19778 1.00522 1.03518 0.91953 1.21283 0.94696 1.03445 0.95704 1.96732 1.42821 1.97179 1.54676 0.95814 0.92984 0.94280 0.95021 0.88150 0.92453 0.78346 0.81005 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.57 5.02 -56.31 -0.28 -14.86 16 14 C 0.56 11.40 6.34 -12.94 -0.08 11.32 16 15 O -0.51 -11.62 11.85 5.17 0.06 -11.56 16 16 C -0.22 -3.55 6.45 -36.80 -0.24 -3.79 16 17 S 0.24 2.82 22.15 -107.50 -2.38 0.44 16 18 C -0.24 -2.46 10.92 29.16 0.32 -2.14 16 19 C -0.13 -1.47 10.03 -41.39 -0.42 -1.88 16 20 C -0.06 -0.85 6.29 -40.36 -0.25 -1.11 16 21 Br 0.00 0.02 31.69 -68.01 -2.16 -2.14 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 24 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.38 7.06 7.65 -40.82 -0.31 6.74 16 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -29.03 286.23 -8.84 -37.86 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -2.95 Total: 3.88 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.53 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.34 Total: -38.61 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.06 Total: -11.56 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.38 Total: 0.44 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.16 Total: -2.14 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.03 -8.84 -37.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108657510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.571 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds