Wall clock time and date at job start Tue Mar 31 2020 11:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21718 * 119.99811 * 359.97438 * 14 13 3 16 16 C 1.46477 * 120.00504 * 180.02562 * 14 13 3 17 17 S 1.75825 * 125.46084 * 0.02562 * 16 14 13 18 18 C 1.70610 * 91.58073 * 179.97438 * 17 16 14 19 19 C 1.33769 * 110.98927 * 359.97438 * 18 17 16 20 20 C 1.36756 * 125.45958 * 179.71745 * 16 14 13 21 21 Br 1.89104 * 123.37639 * 359.97438 * 20 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 29 29 H 1.07999 * 124.50174 * 180.02562 * 18 17 16 30 30 H 1.07998 * 122.45486 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6327 0.4307 16 6 0.0478 3.3198 2.6183 17 16 1.0532 3.4512 4.0547 18 6 -0.1680 4.3015 4.8893 19 6 -1.2498 4.4646 4.1197 20 6 -1.1517 3.9328 2.8546 21 35 -2.5376 4.0364 1.5722 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0604 -2.9502 28 1 2.2719 2.1232 1.9977 29 1 -0.0789 4.6610 5.9038 30 1 -2.1343 4.9794 4.4647 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108657510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:46 Heat of formation + Delta-G solvation = -20.334538 kcal Electronic energy + Delta-G solvation = -16599.672017 eV Core-core repulsion = 13760.263577 eV Total energy + Delta-G solvation = -2839.408440 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78524 -38.71829 -36.83019 -34.32733 -32.96886 -32.17897 -30.43661 -28.78265 -25.79833 -24.84120 -22.83020 -21.34587 -20.29954 -19.66726 -18.19318 -17.24522 -16.85679 -16.41986 -16.34302 -15.64020 -14.79534 -14.60680 -14.50846 -13.98212 -13.71696 -13.43832 -13.40793 -13.15625 -12.88419 -12.64198 -12.19680 -12.08733 -12.06221 -11.78079 -11.60220 -11.37495 -11.06357 -10.54434 -10.37599 -9.96152 -9.59983 -9.48724 -8.14960 -6.32500 -0.64457 0.06312 0.75748 1.14886 1.23677 1.46381 1.48080 1.55808 2.24051 2.33610 2.56482 3.14684 3.86863 4.08236 4.20400 4.50587 4.58257 4.69975 4.77440 4.95672 5.04841 5.08549 5.27558 5.44397 5.53776 5.59851 5.79103 5.90535 6.16585 6.73394 6.89010 7.31506 7.48121 8.90257 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.004767 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.095331 B = 5871.813254 C = 6746.105330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.282 3.718 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.561 3.439 15 O -0.546 6.546 16 C -0.274 4.274 17 S 0.284 5.716 18 C -0.209 4.209 19 C -0.141 4.141 20 C -0.052 4.052 21 Br -0.018 7.018 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.265 0.735 28 H 0.397 0.603 29 H 0.218 0.782 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 7.982 16.910 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.350 5.350 14 C 0.347 3.653 15 O -0.426 6.426 16 C -0.397 4.397 17 S 0.550 5.450 18 C -0.348 4.348 19 C -0.171 4.171 20 C -0.149 4.149 21 Br 0.067 6.933 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.231 0.769 29 H 0.235 0.765 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.133 7.414 15.967 18.995 hybrid contribution -0.200 0.357 -0.442 0.603 sum -7.333 7.771 15.525 18.846 Atomic orbital electron populations 1.21669 0.96961 0.99090 1.00283 1.21787 0.93717 0.99030 1.01354 1.18411 0.93781 0.89160 0.80770 0.97883 1.21522 0.91262 1.39223 1.06852 0.91082 1.25743 1.03271 0.94281 0.94936 1.70040 1.37140 1.38185 1.09795 0.85441 0.79121 0.78449 0.77600 1.18814 1.21221 1.19690 1.46170 1.14715 1.56213 1.17868 1.17298 0.82626 0.78968 0.86433 1.90864 1.51576 1.60070 1.40053 1.24755 1.00954 1.12362 1.01662 1.83039 1.14458 1.48269 0.99225 1.25772 0.97207 1.04922 1.06852 1.19974 1.02310 1.04258 0.90597 1.21621 0.93709 1.03003 0.96594 1.96709 1.43464 1.97129 1.56020 0.93687 0.95305 0.94036 0.94118 0.90773 0.92562 0.76885 0.76518 0.80833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 14.48 2.24 44.25 0.10 14.58 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -28.97 8.73 25.60 0.22 -28.74 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.97 5.29 84.66 0.45 1.41 16 8 N -0.91 -52.01 11.29 21.45 0.24 -51.77 16 9 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.70 -29.62 5.02 -450.27 -2.26 -31.88 16 14 C 0.56 23.19 6.34 86.39 0.55 23.73 16 15 O -0.55 -26.06 11.85 -4.41 -0.05 -26.11 16 16 C -0.27 -8.73 6.45 24.07 0.16 -8.57 16 17 S 0.28 5.85 22.15 -56.49 -1.25 4.60 16 18 C -0.21 -3.19 10.92 66.80 0.73 -2.46 16 19 C -0.14 -2.81 10.03 21.10 0.21 -2.60 16 20 C -0.05 -1.52 6.29 21.77 0.14 -1.38 16 21 Br -0.02 -0.57 31.69 -20.37 -0.65 -1.22 16 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 24 H 0.04 1.86 5.65 -2.38 -0.01 1.84 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 4.09 5.95 -2.39 -0.01 4.07 16 27 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.40 14.41 7.65 -92.71 -0.71 13.71 16 29 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -65.82 286.23 1.86 -63.96 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.47 Total: 13.53 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.33 Total: -14.81 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.02 Total: -83.65 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.25 Total: 4.60 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.65 Total: -1.22 kcal Total: -65.82 1.86 -63.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108657510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.629 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds