Wall clock time and date at job start Tue Mar 31 2020 11:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99786 * 2 1 4 4 H 1.48500 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46936 * 299.99932 * 3 2 1 6 6 H 1.48502 * 109.46983 * 59.99788 * 3 2 1 7 7 C 1.37870 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46813 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46702 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00056 * 179.97438 * 12 11 10 14 14 O 1.21719 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.46492 * 120.00137 * 180.02562 * 13 12 11 16 16 C 1.36687 * 125.44922 * 180.02562 * 15 13 12 17 17 C 1.37425 * 113.30692 * 179.97438 * 16 15 13 18 18 C 1.33968 * 115.08315 * 0.02562 * 17 16 15 19 19 Br 1.89097 * 124.52665 * 179.97438 * 18 17 16 20 20 S 1.70613 * 110.94115 * 359.97438 * 18 17 16 21 21 H 0.97006 * 119.99949 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47493 * 60.00321 * 9 7 2 23 23 H 1.08999 * 109.47455 * 299.99521 * 9 7 2 24 24 H 1.08990 * 109.46848 * 60.00295 * 10 9 7 25 25 H 1.08995 * 109.47218 * 299.99690 * 10 9 7 26 26 H 1.09002 * 109.46951 * 60.00354 * 11 10 9 27 27 H 1.08995 * 109.47065 * 299.99783 * 11 10 9 28 28 H 0.97004 * 120.00275 * 0.02562 * 12 11 10 29 29 H 1.07993 * 123.34442 * 0.27002 * 16 15 13 30 30 H 1.07997 * 122.45260 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1005 -0.0007 13 6 1.9832 -7.3712 -0.0008 14 8 0.7865 -7.5937 0.0000 15 6 2.9352 -8.4847 -0.0009 16 6 2.6041 -9.8108 -0.0015 17 6 3.6968 -10.6441 -0.0020 18 6 4.8842 -10.0237 -0.0012 19 35 6.5556 -10.9080 -0.0009 20 16 4.6867 -8.3290 -0.0005 21 1 -0.4850 0.8401 0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6042 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 0.8540 -5.0445 -0.8904 27 1 0.8535 -5.0450 0.8896 28 1 3.3861 -5.9233 -0.0003 29 1 1.5850 -10.1682 -0.0063 30 1 3.6051 -11.7202 -0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112724039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:55 Heat of formation + Delta-G solvation = -20.345086 kcal Electronic energy + Delta-G solvation = -15282.790100 eV Core-core repulsion = 12443.381203 eV Total energy + Delta-G solvation = -2839.408897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.77988 -37.92643 -35.49998 -33.41172 -32.41176 -31.34498 -29.23222 -26.83529 -24.92187 -23.21751 -21.36100 -20.73147 -19.48285 -18.44037 -16.65638 -16.24164 -15.78342 -15.52192 -15.01959 -14.46487 -14.29571 -13.70217 -13.55600 -13.35064 -12.78954 -12.33178 -11.89200 -11.83642 -11.50412 -11.27344 -10.94585 -10.85415 -10.77605 -10.60468 -10.18387 -9.92778 -9.47948 -9.18030 -9.14553 -9.03984 -8.87873 -8.40111 -6.04491 -4.07713 -0.03440 0.56327 1.23494 1.39282 1.93615 3.08370 3.14703 3.28522 3.36255 3.39721 4.42217 4.64697 4.75329 4.92917 5.31564 5.40044 5.52860 5.69716 5.71949 5.82609 6.08134 6.29794 6.52572 6.72650 6.93391 7.46852 7.60234 7.71834 7.93898 8.11645 8.34891 8.99079 9.56845 11.06817 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.002376 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.161054 B =11780.521755 C =12722.933994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.719 5.719 13 C 0.582 3.418 14 O -0.526 6.526 15 C -0.241 4.241 16 C -0.063 4.063 17 C -0.105 4.105 18 C -0.232 4.232 19 Br 0.013 6.987 20 S 0.262 5.738 21 H 0.261 0.739 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.396 0.604 29 H 0.162 0.838 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.985 -25.221 -0.007 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.369 5.369 13 C 0.366 3.634 14 O -0.404 6.404 15 C -0.364 4.364 16 C -0.096 4.096 17 C -0.139 4.139 18 C -0.431 4.431 19 Br 0.097 6.903 20 S 0.529 5.471 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.229 0.771 29 H 0.180 0.820 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.611 -24.314 -0.007 28.366 hybrid contribution -0.381 -0.129 -0.001 0.403 sum 14.229 -24.443 -0.008 28.283 Atomic orbital electron populations 1.69976 1.06069 1.26627 1.50587 1.25031 0.94858 0.99340 0.95240 0.86526 0.80059 0.83725 0.77623 1.19728 1.20982 1.20986 1.21231 0.93045 0.90888 1.50909 0.92553 1.19037 0.93812 0.90785 0.97747 1.21920 0.99872 0.93182 1.01057 1.21761 0.91686 0.84662 1.02486 1.46142 1.10806 1.05704 1.74245 1.16908 0.87255 0.81906 0.77331 1.90855 1.15136 1.84396 1.50005 1.25071 0.97368 0.98655 1.15292 1.20738 1.00927 0.90194 0.97746 1.20075 0.89569 1.02238 1.02051 1.25830 0.97417 1.01742 1.18109 1.96760 1.19093 1.76645 1.97823 1.83228 0.98997 0.98522 1.66339 0.92947 0.96193 0.96180 0.92571 0.92578 0.91244 0.91238 0.77059 0.82004 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.33 5.27 -26.72 -0.14 -2.47 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.72 -10.27 5.55 -61.67 -0.34 -10.62 16 13 C 0.58 8.67 7.78 -12.94 -0.10 8.57 16 14 O -0.53 -9.67 16.84 5.17 0.09 -9.59 16 15 C -0.24 -2.82 6.45 -36.82 -0.24 -3.05 16 16 C -0.06 -0.64 10.01 -40.44 -0.40 -1.04 16 17 C -0.10 -0.89 10.05 -41.38 -0.42 -1.31 16 18 C -0.23 -2.07 6.70 29.23 0.20 -1.88 16 19 Br 0.01 0.10 34.04 -68.01 -2.32 -2.21 16 20 S 0.26 2.41 22.14 -107.50 -2.38 0.03 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.40 4.67 7.58 -40.82 -0.31 4.36 16 29 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -31.20 302.79 -9.58 -40.78 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.23 Total: -1.41 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.68 Total: -11.96 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.39 Total: -36.45 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.38 Total: 0.03 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -2.32 Total: -2.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.20 -9.58 -40.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112724039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.433 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds