Wall clock time and date at job start Tue Mar 31 2020 10:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 C 1.50696 * 109.47259 * 179.72770 * 12 10 9 14 14 C 1.38222 * 119.99570 * 264.72374 * 13 12 10 15 15 C 1.38336 * 119.99354 * 179.74734 * 14 13 12 16 16 Cl 1.73605 * 120.00222 * 180.27417 * 15 14 13 17 17 C 1.38372 * 119.99403 * 0.55209 * 15 14 13 18 18 C 1.38182 * 120.00089 * 359.69970 * 17 15 14 19 19 C 1.38302 * 119.99834 * 84.99931 * 13 12 10 20 20 Br 1.89093 * 120.00039 * 0.02562 * 19 13 12 21 21 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 24 24 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 25 25 H 1.07994 * 120.00194 * 0.02562 * 14 13 12 26 26 H 1.08006 * 120.00516 * 179.68136 * 17 15 14 27 27 H 1.07991 * 120.00373 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 6 2.2227 -6.0084 -0.0047 14 6 2.5827 -6.6026 -1.1996 15 6 3.4856 -7.6507 -1.2064 16 17 3.9434 -8.3925 -2.7078 17 6 4.0195 -8.1115 -0.0159 18 6 3.6555 -7.5207 1.1791 19 6 2.7568 -6.4687 1.1851 20 35 2.2577 -5.6613 2.8205 21 1 -0.4850 0.8401 -0.0004 22 1 0.3532 -2.3906 0.0016 23 1 0.6209 -4.9225 0.8949 24 1 0.6128 -4.9187 -0.8850 25 1 2.1626 -6.2458 -2.1283 26 1 4.7205 -8.9331 -0.0205 27 1 4.0725 -7.8800 2.1082 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125650210.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:22 Heat of formation + Delta-G solvation = -41.834160 kcal Electronic energy + Delta-G solvation = -15843.217852 eV Core-core repulsion = 12865.000318 eV Total energy + Delta-G solvation = -2978.217534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91730 -39.61662 -37.55124 -35.97877 -34.01428 -33.22123 -33.04039 -30.36775 -28.94950 -26.55008 -23.71197 -22.95756 -21.00823 -19.89868 -17.90026 -17.76571 -17.15820 -16.55597 -16.38912 -15.75627 -15.44856 -14.86836 -14.86043 -14.36379 -14.02370 -13.51126 -13.30266 -12.96967 -12.87456 -12.70156 -12.44877 -12.38382 -12.12043 -11.91101 -11.54684 -11.46473 -11.14342 -10.46809 -9.99580 -9.95210 -9.55282 -8.45280 -5.93272 -0.13950 0.14604 0.60359 1.05197 1.36356 1.41940 1.55630 2.06283 2.27416 2.40087 3.21810 3.30222 3.54458 3.69914 4.05302 4.14711 4.28173 4.43797 4.47648 4.62755 4.83104 4.93214 5.07955 5.19464 5.43309 5.56017 6.00983 6.59923 7.13742 7.56868 8.11678 8.72298 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.004879 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.288629 B = 5736.929908 C = 7042.650116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.328 4.328 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.453 3.547 11 O -0.620 6.620 12 C -0.101 4.101 13 C -0.026 4.026 14 C -0.106 4.106 15 C -0.025 4.025 16 Cl -0.057 7.057 17 C -0.105 4.105 18 C -0.078 4.078 19 C -0.091 4.091 20 Br -0.047 7.047 21 H 0.277 0.723 22 H 0.396 0.604 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.145 0.855 26 H 0.171 0.829 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -17.329 1.976 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.240 3.760 11 O -0.507 6.507 12 C -0.141 4.141 13 C -0.029 4.029 14 C -0.125 4.125 15 C -0.053 4.053 16 Cl -0.028 7.028 17 C -0.124 4.124 18 C -0.098 4.098 19 C -0.170 4.170 20 Br 0.039 6.961 21 H 0.086 0.914 22 H 0.230 0.770 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.163 0.837 26 H 0.188 0.812 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.699 -16.925 2.459 17.314 hybrid contribution -0.130 0.864 -0.509 1.012 sum 2.569 -16.061 1.949 16.381 Atomic orbital electron populations 1.69676 1.06751 1.29137 1.50497 1.25983 0.96494 1.02240 0.96440 0.84931 0.78094 0.77416 0.78291 1.19846 1.19601 1.19731 1.19669 0.92629 0.83897 1.49565 0.90326 1.41887 1.09299 1.04578 1.64962 1.20338 0.87972 0.85416 0.82229 1.90520 1.15536 1.87925 1.56700 1.20724 0.97355 0.89424 1.06586 1.19239 0.96900 0.94761 0.92000 1.21011 0.98003 0.95430 0.98097 1.21059 0.99058 0.96765 0.88372 1.98370 1.91368 1.81277 1.31791 1.21315 1.00450 1.01314 0.89347 1.21319 0.94940 0.93576 0.99990 1.21986 1.03193 1.00131 0.91728 1.96695 1.91309 1.82370 1.25772 0.91361 0.76980 0.87150 0.86236 0.83731 0.81180 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.45 13.05 21.66 0.28 -49.17 15 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15 3 Si 0.99 43.02 29.55 68.60 2.03 45.05 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.33 -18.51 9.68 84.04 0.81 -17.70 15 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 15 9 N -0.57 -29.00 5.29 -306.98 -1.62 -30.63 15 10 C 0.45 21.12 7.74 87.66 0.68 21.80 15 11 O -0.62 -33.53 15.61 -3.08 -0.05 -33.58 15 12 C -0.10 -3.46 5.27 29.10 0.15 -3.31 15 13 C -0.03 -0.85 4.37 -19.85 -0.09 -0.93 15 14 C -0.11 -3.04 9.46 22.29 0.21 -2.83 15 15 C -0.03 -0.63 6.32 22.32 0.14 -0.49 15 16 Cl -0.06 -1.24 28.96 -2.72 -0.08 -1.32 15 17 C -0.11 -2.26 9.83 22.29 0.22 -2.04 15 18 C -0.08 -1.86 9.79 22.29 0.22 -1.65 15 19 C -0.09 -2.73 6.22 22.31 0.14 -2.59 15 20 Br -0.05 -1.45 31.85 -20.37 -0.65 -2.10 15 21 H 0.28 13.93 8.31 -92.71 -0.77 13.16 15 22 H 0.40 19.20 7.90 -92.71 -0.73 18.47 15 23 H 0.11 3.50 6.89 -2.39 -0.02 3.49 15 24 H 0.12 3.43 8.05 -2.39 -0.02 3.41 15 25 H 0.14 3.84 8.06 -2.91 -0.02 3.82 15 26 H 0.17 2.50 8.06 -2.91 -0.02 2.47 15 27 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 Total: -1.00 -65.10 282.29 3.36 -61.75 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.49 Total: 19.90 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 2.95 Total: -9.90 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.34 Total: -79.80 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.05 Total: -33.58 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Atomic # 35 Polarization: -1.45 SS G_CDS: -0.65 Total: -2.10 kcal Total: -65.10 3.36 -61.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125650210.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.911 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds