Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46902 * 109.47024 * 2 1 4 4 C 1.46904 * 110.99938 * 288.06055 * 3 2 1 5 5 C 1.50699 * 109.47094 * 160.35868 * 4 3 2 6 6 H 1.08003 * 120.00003 * 4.65763 * 5 4 3 7 7 C 1.37870 * 120.00398 * 184.65191 * 5 4 3 8 8 N 1.31523 * 119.99645 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00469 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47118 * 60.00102 * 9 7 5 11 11 H 1.48501 * 109.47256 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47065 * 300.00413 * 9 7 5 13 13 C 1.46895 * 110.99640 * 164.10743 * 3 2 1 14 14 C 1.50700 * 109.47452 * 293.94981 * 13 3 2 15 15 C 1.33365 * 125.18913 * 90.00085 * 14 13 3 16 16 C 1.38450 * 114.92812 * 180.29486 * 15 14 13 17 17 C 1.50694 * 122.55604 * 179.72651 * 16 15 14 18 18 C 1.33486 * 114.89156 * 359.48897 * 16 15 14 19 19 Br 1.89095 * 125.20583 * 180.21048 * 18 16 15 20 20 S 1.75873 * 125.19571 * 270.02865 * 14 13 3 21 21 H 1.08999 * 109.47025 * 299.50431 * 1 2 3 22 22 H 1.08997 * 109.46923 * 59.49439 * 1 2 3 23 23 H 1.08994 * 109.46943 * 179.50118 * 1 2 3 24 24 H 1.08993 * 109.46927 * 239.99932 * 2 1 3 25 25 H 1.08994 * 109.46830 * 119.99935 * 2 1 3 26 26 H 1.08996 * 109.46870 * 280.35832 * 4 3 2 27 27 H 1.09000 * 109.46856 * 40.36530 * 4 3 2 28 28 H 0.96996 * 119.99765 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46948 * 173.95356 * 13 3 2 30 30 H 1.09003 * 109.47429 * 53.95456 * 13 3 2 31 31 H 1.08000 * 122.53516 * 0.02562 * 15 14 13 32 32 H 1.08999 * 109.46939 * 90.00151 * 17 16 15 33 33 H 1.08998 * 109.47623 * 209.99927 * 17 16 15 34 34 H 1.08996 * 109.47263 * 330.00226 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7943 2.0231 -1.3039 5 6 1.8458 3.5209 -1.1458 6 1 2.1019 3.9546 -0.1904 7 6 1.5660 4.3376 -2.2207 8 7 1.2537 3.8095 -3.3841 9 14 1.6304 6.1942 -2.0249 10 1 2.9974 6.6012 -1.6115 11 1 1.2909 6.8404 -3.3182 12 1 0.6536 6.6169 -0.9894 13 6 3.4387 1.4416 0.3755 14 6 3.5968 1.0056 1.8094 15 6 3.8053 -0.2484 2.2129 16 6 3.9128 -0.4101 3.5837 17 6 4.1429 -1.7536 4.2262 18 6 3.8021 0.7155 4.2926 19 35 3.9090 0.8321 6.1769 20 16 3.5337 2.0724 3.2062 21 1 -0.3633 0.5061 0.8944 22 1 -0.3633 0.5217 -0.8854 23 1 -0.3633 -1.0276 -0.0089 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.5679 1.7047 -2.0027 27 1 0.8163 1.7316 -1.6868 28 1 1.0565 4.3841 -4.1402 29 1 3.8036 2.4627 0.2640 30 1 4.0126 0.7780 -0.2714 31 1 3.8800 -1.0757 1.5227 32 1 5.2140 -1.9335 4.3184 33 1 3.6859 -1.7664 5.2156 34 1 3.6954 -2.5328 3.6092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127630222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = 12.571346 kcal Electronic energy + Delta-G solvation = -16531.203974 eV Core-core repulsion = 13829.055535 eV Total energy + Delta-G solvation = -2702.148439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -39.84134 -38.26394 -34.81040 -33.45650 -32.01695 -31.21631 -29.25410 -27.76380 -26.22562 -24.48075 -22.71303 -21.43343 -19.70104 -18.61070 -18.23578 -16.84137 -16.43063 -16.06770 -15.63302 -15.12592 -14.97343 -14.45970 -14.17741 -13.98455 -13.79619 -13.24938 -13.14296 -12.97713 -12.89469 -12.69508 -12.57221 -12.52087 -12.25370 -12.10171 -11.79128 -11.74559 -11.49913 -11.27544 -11.18879 -10.57981 -9.52162 -9.33484 -9.02203 -8.18737 -6.28086 -0.19852 0.12828 0.85219 0.98769 1.41102 1.43399 1.51153 1.58109 2.40825 3.12603 3.34258 3.75221 4.12952 4.24492 4.27869 4.35071 4.47169 4.59179 4.68356 4.73197 4.82374 4.90814 5.02094 5.04671 5.12021 5.25928 5.26430 5.30594 5.38141 5.48639 5.67039 6.08651 6.33898 6.60993 6.86152 7.41099 8.91310 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.003860 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.193897 B = 7251.587216 C = 8154.084672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.208 3.792 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.129 3.871 14 C -0.142 4.142 15 C -0.138 4.138 16 C -0.052 4.052 17 C -0.100 4.100 18 C -0.232 4.232 19 Br 0.014 6.986 20 S 0.142 5.858 21 H 0.052 0.948 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.022 0.978 25 H 0.088 0.912 26 H -0.035 1.035 27 H 0.017 0.983 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -11.297 18.749 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 N -0.263 5.263 4 C 0.082 3.918 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.196 1.196 13 C -0.001 4.001 14 C -0.261 4.261 15 C -0.169 4.169 16 C -0.068 4.068 17 C -0.159 4.159 18 C -0.429 4.429 19 Br 0.097 6.903 20 S 0.407 5.593 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.041 0.959 25 H 0.106 0.894 26 H -0.017 1.017 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.179 0.821 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.227 -9.340 19.820 22.778 hybrid contribution 0.453 -0.676 -1.709 1.893 sum 6.680 -10.017 18.111 21.748 Atomic orbital electron populations 1.21692 0.94944 1.01627 1.01209 1.22202 0.96556 0.89113 1.00419 1.62088 1.15665 1.16705 1.31853 1.19433 0.94537 0.93683 0.84160 1.21405 1.46278 0.91999 0.96202 0.92447 1.25801 0.94912 1.03660 0.94810 1.70061 1.48330 1.37069 1.01834 0.85561 0.78947 0.79541 0.77358 1.19325 1.20780 1.19600 1.20382 0.90093 1.01017 0.88579 1.24576 1.05705 0.97168 0.98654 1.20123 1.05063 0.96618 0.95138 1.19118 0.98625 0.96494 0.92599 1.20738 1.03491 0.90753 1.00879 1.26046 1.21183 0.99970 0.95674 1.96610 1.97642 1.98325 0.97685 1.84609 1.70293 1.09322 0.95081 0.92918 0.94818 0.90268 0.95947 0.89375 1.01712 0.96469 0.92718 0.91097 0.93036 0.82130 0.89350 0.90669 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.98 71.99 0.72 -3.88 16 2 C 0.04 1.56 5.54 86.31 0.48 2.03 16 3 N -0.54 -22.68 4.37 -905.36 -3.96 -26.64 16 4 C 0.21 10.83 4.59 85.56 0.39 11.22 16 5 C -0.52 -29.27 8.61 25.60 0.22 -29.05 16 6 H 0.06 3.20 7.66 -2.91 -0.02 3.18 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 9 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.13 4.79 5.28 85.56 0.45 5.24 16 14 C -0.14 -4.39 5.49 24.58 0.13 -4.26 16 15 C -0.14 -3.49 8.18 21.22 0.17 -3.32 16 16 C -0.05 -1.21 5.81 -20.89 -0.12 -1.33 16 17 C -0.10 -1.59 9.85 71.23 0.70 -0.89 16 18 C -0.23 -5.92 6.95 66.74 0.46 -5.46 16 19 Br 0.01 0.29 32.87 -20.37 -0.67 -0.38 16 20 S 0.14 4.29 23.33 -56.49 -1.32 2.97 16 21 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.03 1.30 6.52 -2.39 -0.02 1.28 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.02 0.78 8.05 -2.39 -0.02 0.76 16 25 H 0.09 2.62 5.41 -2.39 -0.01 2.61 16 26 H -0.03 -1.94 8.00 -2.39 -0.02 -1.96 16 27 H 0.02 0.97 6.24 -2.39 -0.01 0.96 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.07 2.94 7.32 -2.39 -0.02 2.92 16 30 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 31 H 0.16 3.41 7.84 -2.91 -0.02 3.39 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.16 7.27 -2.39 -0.02 1.14 16 34 H 0.09 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -61.78 313.74 1.53 -60.25 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.09 Total: 1.61 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.08 Total: -28.87 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.67 Total: -81.95 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.32 Total: 2.97 kcal Atomic # 35 Polarization: 0.29 SS G_CDS: -0.67 Total: -0.38 kcal Total: -61.78 1.53 -60.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127630222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.821 kcal (2) G-P(sol) polarization free energy of solvation -61.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds