Wall clock time and date at job start Tue Mar 31 2020 11:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36873 * 120.00433 * 2 1 4 4 H 1.07998 * 120.00201 * 193.24847 * 3 2 1 5 5 C 1.39045 * 119.99471 * 13.51519 * 3 2 1 6 6 N 1.31368 * 120.00052 * 215.78626 * 5 3 2 7 7 Si 1.86801 * 120.00364 * 35.78946 * 5 3 2 8 8 H 1.48498 * 109.47087 * 97.47471 * 7 5 3 9 9 H 1.48497 * 109.47139 * 217.47639 * 7 5 3 10 10 H 1.48503 * 109.46541 * 337.47600 * 7 5 3 11 11 C 1.34777 * 119.99776 * 179.97438 * 2 1 3 12 12 O 1.21595 * 119.99845 * 177.23977 * 11 2 1 13 13 C 1.47733 * 120.00334 * 357.24135 * 11 2 1 14 14 C 1.39654 * 120.13437 * 24.32871 * 13 11 2 15 15 C 1.38051 * 119.84578 * 179.72582 * 14 13 11 16 16 Cl 1.73598 * 119.92639 * 180.32006 * 15 14 13 17 17 C 1.38484 * 120.13627 * 0.57249 * 15 14 13 18 18 C 1.38420 * 120.28511 * 359.70500 * 17 15 14 19 19 Br 1.89099 * 119.92662 * 180.02562 * 18 17 15 20 20 C 1.38054 * 120.14614 * 359.97438 * 18 17 15 21 21 H 1.08997 * 109.46725 * 343.97497 * 1 2 3 22 22 H 1.08997 * 109.47271 * 103.97986 * 1 2 3 23 23 H 1.08996 * 109.47226 * 223.98000 * 1 2 3 24 24 H 0.96999 * 120.00258 * 180.02562 * 6 5 3 25 25 H 1.07994 * 120.07507 * 359.97438 * 14 13 11 26 26 H 1.07996 * 119.85640 * 179.71696 * 17 15 14 27 27 H 1.07997 * 120.07151 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.2079 1.1977 -0.2143 5 6 1.4831 2.3728 0.2814 6 7 1.8218 3.4793 -0.3403 7 14 0.1062 2.3948 1.5436 8 1 0.6393 2.8589 2.8496 9 1 -0.9659 3.3170 1.0906 10 1 -0.4492 1.0257 1.6940 11 6 2.1388 -1.1672 0.0005 12 8 3.3537 -1.1679 -0.0502 13 6 1.4015 -2.4459 0.0627 14 6 0.0782 -2.5143 -0.3786 15 6 -0.6034 -3.7135 -0.3231 16 17 -2.2456 -3.8029 -0.8788 17 6 0.0185 -4.8441 0.1798 18 6 1.3280 -4.7812 0.6240 19 35 2.1676 -6.3314 1.3081 20 6 2.0228 -3.5896 0.5678 21 1 -0.3633 0.9877 0.2837 22 1 -0.3633 -0.2483 -0.9972 23 1 -0.3633 -0.7395 0.7136 24 1 1.3572 4.3078 -0.1437 25 1 -0.4094 -1.6320 -0.7661 26 1 -0.5204 -5.7788 0.2254 27 1 3.0445 -3.5420 0.9143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129370462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:18 Heat of formation + Delta-G solvation = 26.369609 kcal Electronic energy + Delta-G solvation = -16269.912610 eV Core-core repulsion = 13294.652613 eV Total energy + Delta-G solvation = -2975.259997 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48648 -39.48935 -37.55407 -37.03135 -34.57707 -33.41710 -32.11716 -30.62738 -28.57894 -27.55496 -24.56483 -23.54383 -21.22075 -19.36301 -18.38454 -18.26054 -17.17009 -16.80162 -16.55143 -16.03869 -15.38343 -15.32100 -14.76741 -14.42010 -14.37327 -14.12274 -13.69151 -13.03975 -13.00119 -12.70624 -12.66328 -12.35090 -12.03102 -11.74021 -11.40736 -11.31459 -10.93475 -10.39025 -10.09516 -10.05406 -9.81899 -8.70587 -6.01439 -0.39553 -0.18255 0.33211 1.00645 1.18554 1.37039 1.41926 1.72917 2.09341 2.32383 2.60760 2.93159 3.45934 3.73769 3.84918 3.96824 4.06395 4.16516 4.28195 4.45063 4.55280 4.82189 4.87550 5.03101 5.26566 5.38785 5.92214 6.32177 6.79658 7.16308 7.73528 8.44387 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.004773 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.149148 B = 5865.111358 C = 6944.467575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.443 5.443 3 C -0.362 4.362 4 H 0.058 0.942 5 C 0.021 3.979 6 N -0.870 5.870 7 Si 0.919 3.081 8 H -0.290 1.290 9 H -0.256 1.256 10 H -0.196 1.196 11 C 0.465 3.535 12 O -0.625 6.625 13 C -0.096 4.096 14 C -0.106 4.106 15 C -0.030 4.030 16 Cl -0.039 7.039 17 C -0.064 4.064 18 C -0.086 4.086 19 Br -0.021 7.021 20 C -0.051 4.051 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.288 0.712 25 H 0.177 0.823 26 H 0.172 0.828 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 -19.190 3.105 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.159 5.159 3 C -0.489 4.489 4 H 0.076 0.924 5 C -0.186 4.186 6 N -0.504 5.504 7 Si 0.740 3.260 8 H -0.217 1.217 9 H -0.181 1.181 10 H -0.119 1.119 11 C 0.257 3.743 12 O -0.514 6.514 13 C -0.101 4.101 14 C -0.125 4.125 15 C -0.058 4.058 16 Cl -0.010 7.010 17 C -0.084 4.084 18 C -0.166 4.166 19 Br 0.065 6.935 20 C -0.072 4.072 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.194 0.806 26 H 0.190 0.810 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.805 -19.503 3.214 22.526 hybrid contribution 0.082 1.185 0.152 1.198 sum -10.722 -18.318 3.366 21.490 Atomic orbital electron populations 1.23366 0.80201 1.03598 1.02750 1.43661 1.06161 1.04772 1.61314 1.18776 0.95417 0.83407 1.51290 0.92380 1.26109 1.01113 0.93663 0.97701 1.70020 1.43115 1.02149 1.35130 0.86761 0.78482 0.82049 0.78711 1.21729 1.18066 1.11879 1.18268 0.86993 0.83854 0.85177 1.90611 1.15506 1.87305 1.57947 1.19766 0.94483 0.93409 1.02401 1.22633 0.92949 0.99573 0.97365 1.20684 0.88194 0.94253 1.02643 1.98388 1.16381 1.98487 1.87784 1.21330 0.92392 0.99150 0.95559 1.21564 0.96054 0.93005 1.05944 1.96734 1.80137 1.31649 1.84988 1.21191 1.00113 0.90183 0.95714 0.91030 0.89116 0.88435 0.90236 0.80642 0.81045 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 6.57 127.77 0.84 2.31 15 2 N -0.44 -21.25 2.91 -662.34 -1.92 -23.17 15 3 C -0.36 -20.83 9.70 84.10 0.82 -20.01 15 4 H 0.06 3.95 7.45 -2.91 -0.02 3.93 15 5 C 0.02 1.11 5.20 84.96 0.44 1.55 15 6 N -0.87 -48.79 13.95 21.68 0.30 -48.48 15 7 Si 0.92 36.61 26.01 68.60 1.78 38.40 15 8 H -0.29 -12.10 7.11 99.48 0.71 -11.39 15 9 H -0.26 -9.43 7.11 99.48 0.71 -8.73 15 10 H -0.20 -6.54 4.79 99.48 0.48 -6.06 15 11 C 0.47 22.41 7.47 86.75 0.65 23.06 15 12 O -0.63 -36.08 16.21 -4.02 -0.07 -36.14 15 13 C -0.10 -3.46 5.62 -20.09 -0.11 -3.57 15 14 C -0.11 -3.00 7.53 22.57 0.17 -2.83 15 15 C -0.03 -0.69 6.31 22.28 0.14 -0.55 15 16 Cl -0.04 -0.74 28.95 -2.72 -0.08 -0.82 15 17 C -0.06 -1.35 9.56 22.37 0.21 -1.14 15 18 C -0.09 -2.16 6.22 22.27 0.14 -2.02 15 19 Br -0.02 -0.44 33.69 -20.37 -0.69 -1.12 15 20 C -0.05 -1.64 9.33 22.56 0.21 -1.43 15 21 H 0.07 2.55 2.29 -2.39 -0.01 2.55 15 22 H 0.09 2.68 6.34 -2.39 -0.02 2.66 15 23 H 0.10 2.86 5.92 -2.39 -0.01 2.84 15 24 H 0.29 14.49 8.31 -92.71 -0.77 13.72 15 25 H 0.18 4.62 3.63 -2.91 -0.01 4.61 15 26 H 0.17 2.62 8.06 -2.91 -0.02 2.60 15 27 H 0.13 4.61 7.84 -2.91 -0.02 4.59 15 Total: -1.00 -68.51 264.08 3.84 -64.66 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.01 Total: 11.31 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 3.51 Total: -4.64 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.62 Total: -71.65 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.07 Total: -36.14 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 1.78 Total: 38.40 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.69 Total: -1.12 kcal Total: -68.51 3.84 -64.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129370462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.033 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds