Wall clock time and date at job start Tue Mar 31 2020 11:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36879 * 119.99667 * 2 1 4 4 H 1.08000 * 119.99990 * 161.99223 * 3 2 1 5 5 C 1.39040 * 120.00094 * 341.98789 * 3 2 1 6 6 N 1.31367 * 120.00273 * 343.01039 * 5 3 2 7 7 Si 1.86799 * 120.00019 * 163.00338 * 5 3 2 8 8 H 1.48499 * 109.47283 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47196 * 120.00279 * 7 5 3 10 10 H 1.48508 * 109.47328 * 240.00280 * 7 5 3 11 11 C 1.34776 * 120.00146 * 179.97438 * 2 1 3 12 12 O 1.21601 * 119.99600 * 184.42456 * 11 2 1 13 13 C 1.47677 * 120.00165 * 4.42806 * 11 2 1 14 14 C 1.39695 * 120.13598 * 31.89183 * 13 11 2 15 15 C 1.37873 * 119.88454 * 180.02562 * 14 13 11 16 16 C 1.38490 * 120.15609 * 0.02562 * 15 14 13 17 17 Br 1.89096 * 119.86278 * 180.27294 * 16 15 14 18 18 C 1.38575 * 120.27039 * 359.97438 * 16 15 14 19 19 Cl 1.73605 * 119.94089 * 180.02562 * 18 16 15 20 20 C 1.38024 * 120.11820 * 0.02562 * 18 16 15 21 21 H 1.09000 * 109.46652 * 209.93018 * 1 2 3 22 22 H 1.08999 * 109.47230 * 329.93631 * 1 2 3 23 23 H 1.09007 * 109.46802 * 89.93414 * 1 2 3 24 24 H 0.97000 * 120.00039 * 180.02562 * 6 5 3 25 25 H 1.08005 * 120.05492 * 0.04622 * 14 13 11 26 26 H 1.08003 * 119.92163 * 180.02562 * 15 14 13 27 27 H 1.08003 * 120.08128 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.1897 1.2084 0.2891 5 6 1.5052 2.3600 -0.3723 6 7 0.3708 2.3062 -1.0326 7 14 2.2528 4.0147 0.0665 8 1 3.5237 3.8035 0.8050 9 1 2.5246 4.7804 -1.1766 10 1 1.3048 4.7758 0.9193 11 6 2.1390 -1.1672 0.0005 12 8 3.3522 -1.1686 0.0818 13 6 1.4039 -2.4443 -0.0976 14 6 0.2105 -2.5129 -0.8205 15 6 -0.4717 -3.7077 -0.9083 16 6 0.0231 -4.8391 -0.2814 17 35 -0.9154 -6.4754 -0.4137 18 6 1.2063 -4.7784 0.4373 19 17 1.8192 -6.2021 1.2193 20 6 1.8985 -3.5881 0.5326 21 1 -0.3633 -0.8906 0.5128 22 1 -0.3633 0.8894 0.5148 23 1 -0.3633 0.0012 -1.0277 24 1 -0.0784 3.1257 -1.2926 25 1 -0.1768 -1.6314 -1.3100 26 1 -1.3943 -3.7615 -1.4673 27 1 2.8204 -3.5413 1.0933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129540348.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:41 Heat of formation + Delta-G solvation = 3.726871 kcal Electronic energy + Delta-G solvation = -16139.708401 eV Core-core repulsion = 13163.466541 eV Total energy + Delta-G solvation = -2976.241860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.76007 -37.85871 -36.35110 -34.96372 -32.51673 -31.76405 -30.69064 -29.29545 -26.54182 -25.08163 -22.76731 -22.52545 -19.72296 -17.33469 -16.82286 -16.04967 -15.52220 -15.23076 -14.43527 -14.21900 -14.06593 -13.70824 -13.44947 -12.84562 -12.22440 -11.96836 -11.63940 -11.58481 -11.42514 -11.16837 -11.03831 -10.92614 -10.67814 -10.43752 -10.38197 -10.12813 -9.21192 -8.84012 -8.70773 -8.44854 -7.95531 -6.59095 -4.02375 0.84025 1.26246 1.48791 2.14026 3.00948 3.15093 3.22185 3.31236 3.95419 4.10535 4.59175 4.75273 4.93935 5.18473 5.32484 5.38780 5.51051 5.84752 6.01333 6.16347 6.19227 6.51054 6.62738 6.70898 6.98615 7.35269 7.88384 8.25185 8.95601 9.16212 9.74650 10.44299 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.033463 B = 0.003749 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.554491 B = 7466.077613 C = 8187.956234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.422 5.422 3 C -0.303 4.303 4 H 0.108 0.892 5 C 0.032 3.968 6 N -0.867 5.867 7 Si 0.929 3.071 8 H -0.265 1.265 9 H -0.279 1.279 10 H -0.278 1.278 11 C 0.463 3.537 12 O -0.586 6.586 13 C -0.063 4.063 14 C -0.098 4.098 15 C -0.087 4.087 16 C -0.090 4.090 17 Br -0.044 7.044 18 C -0.019 4.019 19 Cl -0.057 7.057 20 C -0.068 4.068 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.272 0.728 25 H 0.156 0.844 26 H 0.141 0.859 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -13.700 0.992 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.138 5.138 3 C -0.431 4.431 4 H 0.126 0.874 5 C -0.173 4.173 6 N -0.505 5.505 7 Si 0.755 3.245 8 H -0.189 1.189 9 H -0.205 1.205 10 H -0.204 1.204 11 C 0.253 3.747 12 O -0.472 6.472 13 C -0.067 4.067 14 C -0.118 4.118 15 C -0.106 4.106 16 C -0.171 4.171 17 Br 0.042 6.958 18 C -0.048 4.048 19 Cl -0.028 7.028 20 C -0.088 4.088 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.173 0.827 26 H 0.159 0.841 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.695 -14.238 0.980 15.764 hybrid contribution 0.312 1.063 0.144 1.118 sum -6.383 -13.175 1.124 14.683 Atomic orbital electron populations 1.21955 0.80957 1.00161 1.01289 1.43580 1.05783 1.04856 1.59544 1.19863 0.97719 0.82751 1.42771 0.87448 1.25400 0.96410 1.00343 0.95156 1.70008 1.17306 1.29473 1.33692 0.85809 0.79410 0.80692 0.78572 1.18906 1.20502 1.20350 1.17703 0.87221 0.82809 0.86980 1.90637 1.13173 1.86458 1.56916 1.20457 0.94446 0.95315 0.96501 1.22092 0.93782 0.98424 0.97515 1.21010 1.00426 0.90574 0.98634 1.21765 0.96698 0.93527 1.05081 1.96674 1.74494 1.27002 1.97642 1.20581 0.95079 0.89367 0.99763 1.98366 1.87112 1.38113 1.79209 1.21109 0.99803 0.89293 0.98631 0.94437 0.90477 0.91936 0.91740 0.82688 0.84097 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.06 7.07 59.85 0.42 2.48 15 2 N -0.42 -10.32 3.02 -123.33 -0.37 -10.69 15 3 C -0.30 -8.03 9.36 -15.00 -0.14 -8.17 15 4 H 0.11 3.00 7.33 -52.49 -0.38 2.62 15 5 C 0.03 0.79 5.00 -17.45 -0.09 0.71 15 6 N -0.87 -21.35 10.68 55.50 0.59 -20.75 15 7 Si 0.93 19.50 29.59 -169.99 -5.03 14.47 15 8 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 11 C 0.46 11.13 7.36 -12.41 -0.09 11.03 15 12 O -0.59 -16.05 16.40 5.28 0.09 -15.97 15 13 C -0.06 -1.20 5.29 -104.97 -0.55 -1.76 15 14 C -0.10 -1.60 7.62 -39.17 -0.30 -1.89 15 15 C -0.09 -1.19 9.77 -39.62 -0.39 -1.58 15 16 C -0.09 -1.28 6.23 -39.36 -0.25 -1.53 15 17 Br -0.04 -0.53 32.50 -68.01 -2.21 -2.74 15 18 C -0.02 -0.29 6.31 -39.54 -0.25 -0.54 15 19 Cl -0.06 -0.78 27.72 -51.86 -1.44 -2.22 15 20 C -0.07 -1.18 9.38 -39.14 -0.37 -1.55 15 21 H 0.04 0.66 5.88 -51.93 -0.31 0.36 15 22 H 0.08 1.69 6.75 -51.93 -0.35 1.34 15 23 H 0.06 1.28 6.34 -51.93 -0.33 0.95 15 24 H 0.27 6.30 8.31 -40.82 -0.34 5.96 15 25 H 0.16 2.49 4.99 -52.48 -0.26 2.22 15 26 H 0.14 1.56 8.06 -52.48 -0.42 1.13 15 27 H 0.15 2.57 7.95 -52.48 -0.42 2.16 15 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -27.94 270.22 -7.90 -35.85 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -1.61 Total: 0.79 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.00 Total: -2.81 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.22 Total: -31.44 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.09 Total: -15.97 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.44 Total: -2.22 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.21 Total: -2.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.94 -7.90 -35.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129540348.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.574 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds