Wall clock time and date at job start Tue Mar 31 2020 11:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36879 * 119.99667 * 2 1 4 4 H 1.08000 * 119.99990 * 161.99223 * 3 2 1 5 5 C 1.39040 * 120.00094 * 341.98789 * 3 2 1 6 6 N 1.31367 * 120.00273 * 343.01039 * 5 3 2 7 7 Si 1.86799 * 120.00019 * 163.00338 * 5 3 2 8 8 H 1.48499 * 109.47283 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47196 * 120.00279 * 7 5 3 10 10 H 1.48508 * 109.47328 * 240.00280 * 7 5 3 11 11 C 1.34776 * 120.00146 * 179.97438 * 2 1 3 12 12 O 1.21601 * 119.99600 * 184.42456 * 11 2 1 13 13 C 1.47677 * 120.00165 * 4.42806 * 11 2 1 14 14 C 1.39695 * 120.13598 * 31.89183 * 13 11 2 15 15 C 1.37873 * 119.88454 * 180.02562 * 14 13 11 16 16 C 1.38490 * 120.15609 * 0.02562 * 15 14 13 17 17 Br 1.89096 * 119.86278 * 180.27294 * 16 15 14 18 18 C 1.38575 * 120.27039 * 359.97438 * 16 15 14 19 19 Cl 1.73605 * 119.94089 * 180.02562 * 18 16 15 20 20 C 1.38024 * 120.11820 * 0.02562 * 18 16 15 21 21 H 1.09000 * 109.46652 * 209.93018 * 1 2 3 22 22 H 1.08999 * 109.47230 * 329.93631 * 1 2 3 23 23 H 1.09007 * 109.46802 * 89.93414 * 1 2 3 24 24 H 0.97000 * 120.00039 * 180.02562 * 6 5 3 25 25 H 1.08005 * 120.05492 * 0.04622 * 14 13 11 26 26 H 1.08003 * 119.92163 * 180.02562 * 15 14 13 27 27 H 1.08003 * 120.08128 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.1897 1.2084 0.2891 5 6 1.5052 2.3600 -0.3723 6 7 0.3708 2.3062 -1.0326 7 14 2.2528 4.0147 0.0665 8 1 3.5237 3.8035 0.8050 9 1 2.5246 4.7804 -1.1766 10 1 1.3048 4.7758 0.9193 11 6 2.1390 -1.1672 0.0005 12 8 3.3522 -1.1686 0.0818 13 6 1.4039 -2.4443 -0.0976 14 6 0.2105 -2.5129 -0.8205 15 6 -0.4717 -3.7077 -0.9083 16 6 0.0231 -4.8391 -0.2814 17 35 -0.9154 -6.4754 -0.4137 18 6 1.2063 -4.7784 0.4373 19 17 1.8192 -6.2021 1.2193 20 6 1.8985 -3.5881 0.5326 21 1 -0.3633 -0.8906 0.5128 22 1 -0.3633 0.8894 0.5148 23 1 -0.3633 0.0012 -1.0277 24 1 -0.0784 3.1257 -1.2926 25 1 -0.1768 -1.6314 -1.3100 26 1 -1.3943 -3.7615 -1.4673 27 1 2.8204 -3.5413 1.0933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129540348.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:40 Heat of formation + Delta-G solvation = -11.643309 kcal Electronic energy + Delta-G solvation = -16140.374902 eV Core-core repulsion = 13163.466541 eV Total energy + Delta-G solvation = -2976.908361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29095 -39.42713 -37.56336 -36.86143 -34.09332 -33.29233 -32.01922 -30.59440 -28.28122 -26.84730 -24.23141 -23.84488 -21.32811 -19.15005 -18.46180 -17.52891 -16.90893 -16.86020 -16.06801 -15.87454 -15.60237 -15.00976 -14.81070 -14.53400 -13.86880 -13.63466 -13.24179 -12.94539 -12.77383 -12.72468 -12.44545 -12.38549 -12.18275 -12.11049 -11.84037 -11.20943 -11.04333 -10.58503 -10.07441 -9.83125 -9.76327 -8.46569 -6.01386 -0.48034 -0.00511 0.33460 0.92403 1.34352 1.42453 1.55583 1.80513 2.22996 2.49374 2.89248 3.05404 3.54372 3.73679 3.97336 4.06537 4.17452 4.51747 4.61296 4.74400 4.86864 4.95821 5.18331 5.26601 5.39314 5.44258 5.97932 6.36745 7.04806 7.30264 7.88038 8.55988 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.033463 B = 0.003749 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.554491 B = 7466.077613 C = 8187.956234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.436 5.436 3 C -0.349 4.349 4 H 0.076 0.924 5 C 0.007 3.993 6 N -0.878 5.878 7 Si 0.990 3.010 8 H -0.275 1.275 9 H -0.272 1.272 10 H -0.263 1.263 11 C 0.456 3.544 12 O -0.634 6.634 13 C -0.087 4.087 14 C -0.091 4.091 15 C -0.070 4.070 16 C -0.084 4.084 17 Br -0.013 7.013 18 C -0.021 4.021 19 Cl -0.040 7.040 20 C -0.072 4.072 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.280 0.720 25 H 0.158 0.842 26 H 0.179 0.821 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 -14.905 0.592 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.151 5.151 3 C -0.477 4.477 4 H 0.094 0.906 5 C -0.198 4.198 6 N -0.515 5.515 7 Si 0.813 3.187 8 H -0.200 1.200 9 H -0.198 1.198 10 H -0.187 1.187 11 C 0.247 3.753 12 O -0.524 6.524 13 C -0.091 4.091 14 C -0.111 4.111 15 C -0.089 4.089 16 C -0.165 4.165 17 Br 0.073 6.927 18 C -0.050 4.050 19 Cl -0.011 7.011 20 C -0.093 4.093 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.175 0.825 26 H 0.196 0.804 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.871 -15.463 0.573 17.836 hybrid contribution 0.913 1.206 0.253 1.534 sum -7.959 -14.256 0.826 16.348 Atomic orbital electron populations 1.21946 0.78876 1.00778 1.01586 1.43765 1.07146 1.04506 1.59708 1.19726 0.97304 0.84677 1.45981 0.90578 1.26063 0.96803 1.02607 0.94282 1.70034 1.17621 1.30635 1.33179 0.84935 0.78456 0.76847 0.78466 1.19995 1.19775 1.18718 1.18458 0.87048 0.84321 0.85473 1.90578 1.15518 1.87589 1.58688 1.20077 0.96078 0.93373 0.99536 1.22076 0.92611 0.99690 0.96700 1.21339 1.00932 0.89052 0.97598 1.22067 0.96058 0.95007 1.03353 1.96728 1.73511 1.25025 1.97446 1.20575 0.95294 0.89217 0.99874 1.98373 1.87050 1.36805 1.78901 1.20995 0.99724 0.89786 0.98791 0.91511 0.92024 0.91669 0.90979 0.82474 0.80359 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.56 7.07 127.77 0.90 5.46 15 2 N -0.44 -22.05 3.02 -662.36 -2.00 -24.05 15 3 C -0.35 -19.33 9.36 84.10 0.79 -18.54 15 4 H 0.08 4.57 7.33 -2.91 -0.02 4.55 15 5 C 0.01 0.34 5.00 84.95 0.42 0.76 15 6 N -0.88 -43.10 10.68 21.68 0.23 -42.87 15 7 Si 0.99 40.36 29.59 68.60 2.03 42.39 15 8 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 10 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 11 C 0.46 22.81 7.36 86.74 0.64 23.45 15 12 O -0.63 -36.87 16.40 -4.03 -0.07 -36.94 15 13 C -0.09 -3.33 5.29 -20.09 -0.11 -3.44 15 14 C -0.09 -2.79 7.62 22.54 0.17 -2.62 15 15 C -0.07 -1.68 9.77 22.24 0.22 -1.46 15 16 C -0.08 -2.13 6.23 22.41 0.14 -1.99 15 17 Br -0.01 -0.27 32.50 -20.37 -0.66 -0.93 15 18 C -0.02 -0.60 6.31 22.30 0.14 -0.46 15 19 Cl -0.04 -1.04 27.72 -2.72 -0.08 -1.11 15 20 C -0.07 -2.51 9.38 22.56 0.21 -2.30 15 21 H 0.07 2.31 5.88 -2.39 -0.01 2.29 15 22 H 0.06 2.71 6.75 -2.39 -0.02 2.69 15 23 H 0.07 2.63 6.34 -2.38 -0.02 2.61 15 24 H 0.28 12.70 8.31 -92.71 -0.77 11.93 15 25 H 0.16 4.77 4.99 -2.91 -0.01 4.76 15 26 H 0.18 3.01 8.06 -2.91 -0.02 2.99 15 27 H 0.14 4.93 7.95 -2.91 -0.02 4.91 15 Total: -1.00 -62.36 270.22 4.21 -58.15 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.22 Total: 6.50 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 3.53 Total: -1.14 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.77 Total: -66.92 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.07 Total: -36.94 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.11 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.66 Total: -0.93 kcal Total: -62.36 4.21 -58.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129540348.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.511 kcal (2) G-P(sol) polarization free energy of solvation -62.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds