Wall clock time and date at job start Tue Mar 31 2020 10:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38327 * 119.92024 * 2 1 4 4 C 1.38120 * 120.08508 * 179.97438 * 3 2 1 5 5 Br 1.89098 * 120.03403 * 180.02562 * 4 3 2 6 6 C 1.39151 * 119.92727 * 0.29925 * 4 3 2 7 7 N 1.39538 * 120.08257 * 179.70097 * 6 4 3 8 8 C 1.34776 * 119.99850 * 204.63401 * 7 6 4 9 9 O 1.21746 * 120.00004 * 5.52327 * 8 7 6 10 10 C 1.46156 * 119.99831 * 185.52124 * 8 7 6 11 11 H 1.08001 * 119.99860 * 359.97438 * 10 8 7 12 12 C 1.40128 * 120.00116 * 180.02562 * 10 8 7 13 13 N 1.30638 * 119.99694 * 359.97438 * 12 10 8 14 14 Si 1.86792 * 120.00070 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47172 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47265 * 119.99674 * 14 12 10 17 17 H 1.48507 * 109.46931 * 239.99516 * 14 12 10 18 18 C 1.38968 * 119.83401 * 359.47170 * 6 4 3 19 19 C 1.38206 * 119.91655 * 0.48101 * 18 6 4 20 20 Cl 1.73595 * 119.96408 * 179.76664 * 19 18 6 21 21 H 1.09003 * 109.46906 * 89.99905 * 1 2 3 22 22 H 1.09000 * 109.47184 * 209.99418 * 1 2 3 23 23 H 1.08990 * 109.47109 * 330.00003 * 1 2 3 24 24 H 1.08004 * 119.94980 * 0.02562 * 3 2 1 25 25 H 0.97001 * 119.99787 * 24.63018 * 7 6 4 26 26 H 0.96995 * 120.00001 * 180.02562 * 13 12 10 27 27 H 1.07997 * 120.04217 * 180.23500 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1989 0.0000 4 6 3.5782 1.2029 0.0005 5 35 4.5200 2.8427 0.0013 6 6 4.2759 -0.0011 -0.0052 7 7 5.6713 -0.0008 -0.0110 8 6 6.3433 -1.0605 -0.5028 9 8 5.7367 -1.9732 -1.0332 10 6 7.8002 -1.1139 -0.3995 11 1 8.3383 -0.3040 0.0706 12 6 8.4990 -2.2154 -0.9113 13 7 7.8481 -3.1948 -1.4804 14 14 10.3609 -2.2840 -0.7787 15 1 10.8540 -1.0608 -0.0961 16 1 10.7576 -3.4820 0.0040 17 1 10.9515 -2.3635 -2.1389 18 6 3.5796 -1.2037 -0.0004 19 6 2.1975 -1.1999 0.0001 20 17 1.3264 -2.7015 0.0000 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3633 0.8899 0.5138 24 1 1.6549 2.1330 0.0004 25 1 6.1576 0.7621 0.3389 26 1 8.3318 -3.9574 -1.8344 27 1 4.1177 -2.1400 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131818891.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:14 Heat of formation + Delta-G solvation = -43.776201 kcal Electronic energy + Delta-G solvation = -16062.904143 eV Core-core repulsion = 13084.602395 eV Total energy + Delta-G solvation = -2978.301747 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18680 -39.19987 -37.51041 -35.71864 -34.66903 -33.14929 -32.47689 -30.22553 -28.94177 -26.86856 -24.11099 -22.83007 -21.66321 -19.66051 -18.33592 -17.73943 -16.73512 -16.36671 -15.91276 -15.62819 -15.30058 -14.88943 -14.57609 -14.42149 -13.58790 -13.33532 -13.20725 -13.09292 -12.93674 -12.83527 -12.74446 -12.37834 -12.00937 -11.85143 -11.62542 -11.28181 -11.09432 -10.87645 -9.99876 -9.65552 -8.82256 -8.41556 -7.00061 -0.10122 0.25239 0.53812 1.08500 1.38011 1.39540 1.57349 2.17323 2.21988 2.55053 2.71970 3.49315 3.70125 3.93281 4.18061 4.24788 4.61876 4.70940 4.86942 4.93490 5.04100 5.17213 5.22554 5.38080 5.56611 5.67654 6.04956 6.08857 6.72983 7.15686 8.23156 8.50700 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.005978 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.544111 B = 4683.022439 C = 6740.711810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.114 4.114 3 C -0.045 4.045 4 C -0.149 4.149 5 Br -0.031 7.031 6 C 0.198 3.802 7 N -0.682 5.682 8 C 0.526 3.474 9 O -0.596 6.596 10 C -0.559 4.559 11 H 0.093 0.907 12 C 0.032 3.968 13 N -0.806 5.806 14 Si 1.000 3.000 15 H -0.246 1.246 16 H -0.267 1.267 17 H -0.267 1.267 18 C -0.154 4.154 19 C -0.005 4.005 20 Cl -0.061 7.061 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.175 0.825 25 H 0.408 0.592 26 H 0.279 0.721 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 11.465 4.457 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.117 4.117 3 C -0.065 4.065 4 C -0.232 4.232 5 Br 0.054 6.946 6 C 0.096 3.904 7 N -0.325 5.325 8 C 0.334 3.666 9 O -0.481 6.481 10 C -0.595 4.595 11 H 0.111 0.889 12 C -0.185 4.185 13 N -0.435 5.435 14 Si 0.819 3.181 15 H -0.169 1.169 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.177 4.177 19 C -0.032 4.032 20 Cl -0.032 7.032 21 H 0.101 0.899 22 H 0.090 0.910 23 H 0.115 0.885 24 H 0.193 0.807 25 H 0.245 0.755 26 H 0.090 0.910 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.118 11.101 3.999 15.543 hybrid contribution 0.965 -0.689 0.021 1.185 sum -9.153 10.412 4.020 14.434 Atomic orbital electron populations 1.20836 0.87162 1.04493 1.03711 1.19956 0.98512 0.89629 1.03570 1.21010 0.90162 0.99035 0.96340 1.21739 0.95757 0.89945 1.15794 1.96602 1.76088 1.23991 1.97926 1.17717 0.84956 0.92396 0.95326 1.43975 1.02784 1.22543 1.63197 1.18770 0.89384 0.80316 0.78098 1.90571 1.70127 1.39014 1.48409 1.21408 0.89733 1.07464 1.40859 0.88930 1.26974 1.06429 0.93468 0.91653 1.70126 1.39750 1.06702 1.26923 0.84923 0.74365 0.79789 0.79025 1.16887 1.19205 1.19223 1.21240 0.92957 0.98778 1.04696 1.20857 0.91208 0.87850 1.03335 1.98326 1.75724 1.32459 1.96689 0.89935 0.91049 0.88533 0.80732 0.75475 0.91047 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.61 71.24 0.68 -1.33 15 2 C -0.11 -3.16 5.89 -19.79 -0.12 -3.28 15 3 C -0.05 -1.22 9.43 22.26 0.21 -1.01 15 4 C -0.15 -4.93 6.24 22.46 0.14 -4.79 15 5 Br -0.03 -0.86 32.31 -20.37 -0.66 -1.52 15 6 C 0.20 8.34 6.42 38.31 0.25 8.59 15 7 N -0.68 -31.32 5.15 -307.49 -1.58 -32.91 15 8 C 0.53 29.64 7.54 86.30 0.65 30.29 15 9 O -0.60 -37.90 12.17 -4.49 -0.05 -37.95 15 10 C -0.56 -30.47 9.54 24.79 0.24 -30.23 15 11 H 0.09 4.52 7.85 -2.91 -0.02 4.49 15 12 C 0.03 1.70 5.50 85.33 0.47 2.17 15 13 N -0.81 -47.20 11.82 21.85 0.26 -46.94 15 14 Si 1.00 39.20 29.56 68.60 2.03 41.23 15 15 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 16 H -0.27 -10.11 7.11 99.48 0.71 -9.41 15 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 18 C -0.15 -6.79 8.49 22.44 0.19 -6.60 15 19 C 0.00 -0.17 6.31 22.31 0.14 -0.03 15 20 Cl -0.06 -1.96 27.28 -2.72 -0.07 -2.03 15 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.07 1.38 6.89 -2.39 -0.02 1.36 15 23 H 0.10 1.30 8.08 -2.39 -0.02 1.28 15 24 H 0.18 3.26 8.06 -2.91 -0.02 3.24 15 25 H 0.41 16.49 7.49 -92.71 -0.69 15.79 15 26 H 0.28 14.75 8.29 -92.71 -0.77 13.98 15 27 H 0.13 6.77 5.78 -2.91 -0.02 6.76 15 Total: -1.00 -68.38 275.19 3.31 -65.07 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.54 Total: 21.27 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 2.85 Total: -6.22 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.32 Total: -79.85 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.05 Total: -37.95 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.03 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.66 Total: -1.52 kcal Total: -68.38 3.31 -65.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131818891.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.296 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds