Wall clock time and date at job start Tue Mar 31 2020 11:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 2 15 15 C 1.38227 * 120.00260 * 259.72480 * 14 13 12 16 16 C 1.38306 * 120.00528 * 179.79169 * 15 14 13 17 17 Br 1.89093 * 119.99796 * 180.20985 * 16 15 14 18 18 C 1.38352 * 120.00231 * 0.46589 * 16 15 14 19 19 C 1.38179 * 120.00411 * 359.78222 * 18 16 15 20 20 C 1.38337 * 120.00124 * 80.00047 * 14 13 12 21 21 Cl 1.73596 * 120.00320 * 359.97438 * 20 14 13 22 22 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 23 23 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 25 25 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 26 26 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 27 27 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 28 28 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 29 29 H 1.08002 * 119.99270 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.99535 * 179.76876 * 18 16 15 31 31 H 1.08010 * 119.99927 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5873 -0.5220 -3.5560 15 6 3.9097 -0.4010 -3.9398 16 6 4.3741 -1.0876 -5.0470 17 35 6.1846 -0.9265 -5.5684 18 6 3.5129 -1.8880 -5.7761 19 6 2.1897 -2.0051 -5.3956 20 6 1.7260 -1.3220 -4.2852 21 17 0.0636 -1.4690 -3.8071 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7087 1.1613 3.4844 26 1 1.4496 -1.4981 -1.4100 27 1 1.0870 0.6162 -2.5525 28 1 2.7589 1.0461 -2.1182 29 1 4.5811 0.2269 -3.3729 30 1 3.8748 -2.4212 -6.6428 31 1 1.5172 -2.6297 -5.9651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134970190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:25 Heat of formation + Delta-G solvation = -0.747985 kcal Electronic energy + Delta-G solvation = -16137.396581 eV Core-core repulsion = 13296.793772 eV Total energy + Delta-G solvation = -2840.602809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.64059 -37.80261 -37.50561 -34.88212 -33.24336 -32.72674 -30.39274 -29.60240 -27.25125 -26.00708 -23.70951 -22.36561 -22.03292 -18.58987 -17.94630 -17.10801 -16.81192 -16.32228 -15.92750 -15.29663 -14.90626 -14.69343 -14.57879 -14.13688 -13.59674 -13.34036 -13.09141 -12.95107 -12.79852 -12.76131 -12.45353 -12.32922 -12.15129 -12.00150 -11.68181 -11.51912 -11.30489 -11.02542 -10.47977 -10.06462 -9.60501 -8.99948 -8.08856 -6.19661 -0.17296 0.13504 0.52372 1.08922 1.42552 1.44626 1.56774 2.35450 2.46374 3.19746 3.49665 3.66276 3.88534 4.06930 4.11827 4.29812 4.49538 4.65753 4.75416 4.82844 4.89887 4.93198 5.05249 5.11026 5.22073 5.39615 5.55171 5.69913 5.81004 6.26315 6.60967 6.75962 6.93825 7.50030 8.96807 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003873 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.528726 B = 7227.509530 C = 8536.872322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.677 5.677 13 C 0.096 3.904 14 C -0.069 4.069 15 C -0.072 4.072 16 C -0.093 4.093 17 Br -0.037 7.037 18 C -0.077 4.077 19 C -0.099 4.099 20 C -0.030 4.030 21 Cl -0.065 7.065 22 H 0.024 0.976 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.169 0.831 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -4.723 -21.256 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.109 3.891 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.308 5.308 13 C -0.034 4.034 14 C -0.071 4.071 15 C -0.092 4.092 16 C -0.172 4.172 17 Br 0.048 6.952 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.057 4.057 21 Cl -0.036 7.036 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.187 0.813 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.420 -4.468 -21.097 22.806 hybrid contribution -1.396 0.012 1.138 1.802 sum 6.023 -4.456 -19.959 21.319 Atomic orbital electron populations 1.22195 0.99927 0.99032 1.00000 1.18955 0.90063 0.92883 0.87244 0.97561 1.21444 1.30345 1.12403 0.90983 0.92853 1.25683 0.95454 0.95863 1.01774 1.70012 1.38011 1.24252 1.23914 0.85484 0.78048 0.78610 0.79323 1.19431 1.20715 1.20638 1.60803 1.57949 1.09219 1.02785 1.20864 0.99366 0.94973 0.88151 1.19735 0.93392 0.97814 0.96143 1.21033 0.94300 0.98699 0.95194 1.21973 0.92544 1.03269 0.99447 1.96730 1.09880 1.97627 1.90917 1.21362 0.91747 0.96762 0.99803 1.21315 0.96333 0.99089 0.95067 1.21166 0.86226 1.00555 0.97775 1.98392 1.16809 1.96716 1.91644 0.95714 0.95279 0.91916 0.93008 0.85171 0.94388 0.90860 0.84235 0.81310 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.36 8.94 71.98 0.64 -6.72 16 2 C 0.22 10.99 2.57 44.17 0.11 11.10 16 3 H 0.01 0.36 7.80 -2.39 -0.02 0.34 16 4 C -0.51 -28.66 8.84 25.60 0.23 -28.43 16 5 H 0.05 3.02 7.81 -2.92 -0.02 3.00 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.85 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.68 -28.80 6.22 -499.46 -3.11 -31.91 16 13 C 0.10 3.38 5.05 85.56 0.43 3.82 16 14 C -0.07 -2.01 5.40 -19.84 -0.11 -2.12 16 15 C -0.07 -1.89 9.41 22.28 0.21 -1.68 16 16 C -0.09 -2.03 6.22 22.31 0.14 -1.89 16 17 Br -0.04 -0.72 33.70 -20.37 -0.69 -1.41 16 18 C -0.08 -1.38 9.79 22.28 0.22 -1.16 16 19 C -0.10 -1.91 9.83 22.29 0.22 -1.69 16 20 C -0.03 -0.76 6.31 22.33 0.14 -0.62 16 21 Cl -0.06 -1.74 26.76 -2.72 -0.07 -1.81 16 22 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 23 H 0.03 1.35 8.13 -2.38 -0.02 1.33 16 24 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 25 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.33 13.65 7.68 -89.69 -0.69 12.96 16 27 H 0.04 1.36 6.65 -2.39 -0.02 1.34 16 28 H 0.07 2.63 7.92 -2.39 -0.02 2.61 16 29 H 0.14 3.65 8.04 -2.91 -0.02 3.63 16 30 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -59.75 298.48 1.55 -58.20 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.46 Total: 11.92 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 2.68 Total: -28.38 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.86 Total: -84.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.69 Total: -1.41 kcal Total: -59.75 1.55 -58.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.449 kcal (2) G-P(sol) polarization free energy of solvation -59.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds