Wall clock time and date at job start Tue Mar 31 2020 11:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 C 1.50703 * 109.47004 * 240.00094 * 2 1 3 5 5 H 1.08006 * 119.99817 * 275.00188 * 4 2 1 6 6 C 1.37879 * 120.00142 * 95.00658 * 4 2 1 7 7 N 1.31514 * 120.00065 * 184.91318 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.90769 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 N 1.46896 * 109.47112 * 120.00111 * 2 1 3 13 13 C 1.46899 * 111.00228 * 274.99952 * 12 2 1 14 14 C 1.50696 * 109.47473 * 179.97438 * 13 12 2 15 15 C 1.38220 * 120.00311 * 259.72637 * 14 13 12 16 16 C 1.38310 * 120.00351 * 179.71763 * 15 14 13 17 17 Br 1.89099 * 119.99883 * 180.27493 * 16 15 14 18 18 C 1.38355 * 120.00474 * 0.55715 * 16 15 14 19 19 C 1.38184 * 119.99961 * 359.71868 * 18 16 15 20 20 C 1.38338 * 119.99746 * 79.99723 * 14 13 12 21 21 Cl 1.73591 * 120.00591 * 0.02731 * 20 14 13 22 22 H 1.08992 * 109.47211 * 175.04685 * 1 2 3 23 23 H 1.09004 * 109.46494 * 55.05084 * 1 2 3 24 24 H 1.08995 * 109.46837 * 295.05881 * 1 2 3 25 25 H 0.96999 * 120.00472 * 179.97438 * 7 6 4 26 26 H 1.00900 * 111.00007 * 151.03875 * 12 2 1 27 27 H 1.09005 * 109.46851 * 299.99822 * 13 12 2 28 28 H 1.09004 * 109.46831 * 59.99901 * 13 12 2 29 29 H 1.07992 * 119.99671 * 359.97438 * 15 14 13 30 30 H 1.07994 * 119.99922 * 179.70199 * 18 16 15 31 31 H 1.08006 * 119.99833 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3581 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3175 9 1 3.5991 2.3948 -1.7821 10 1 2.1060 2.3990 -3.6928 11 1 1.1986 2.3275 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5873 -0.5219 3.5560 15 6 1.6969 -0.9690 4.5139 16 6 2.1597 -1.6573 5.6207 17 35 0.9406 -2.2757 6.9273 18 6 3.5150 -1.8883 5.7750 19 6 4.4060 -1.4364 4.8203 20 6 3.9426 -0.7528 3.7100 21 17 5.0618 -0.1846 2.5109 22 1 -0.3633 -1.0237 -0.0887 23 1 -0.3632 0.5887 -0.8424 24 1 -0.3633 0.4353 0.9309 25 1 2.9365 -0.1049 -4.2556 26 1 2.9173 -1.1206 1.0286 27 1 2.7590 1.0461 2.1182 28 1 1.0871 0.6162 2.5525 29 1 0.6394 -0.7845 4.3961 30 1 3.8767 -2.4215 6.6417 31 1 5.4641 -1.6164 4.9409 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134970212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:30 Heat of formation + Delta-G solvation = -3.604056 kcal Electronic energy + Delta-G solvation = -16203.681992 eV Core-core repulsion = 13362.955334 eV Total energy + Delta-G solvation = -2840.726658 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64287 -37.79432 -37.51821 -34.80190 -33.39871 -32.89103 -30.69048 -29.85079 -27.38415 -26.01820 -23.70368 -22.29661 -21.53301 -19.18729 -18.07670 -17.35531 -16.80204 -16.13496 -15.82612 -15.51154 -14.98301 -14.77412 -14.64044 -14.38770 -13.89301 -13.41785 -13.10200 -12.99069 -12.86812 -12.61945 -12.56797 -12.42531 -12.15615 -11.83904 -11.72390 -11.52212 -11.30238 -11.04582 -10.76433 -10.06678 -9.60782 -9.12492 -8.31522 -6.36737 -0.17782 0.13038 0.52176 1.09667 1.31096 1.32942 1.43233 2.30892 2.35504 3.02874 3.48861 3.65463 3.79467 4.06296 4.11403 4.28766 4.44827 4.55136 4.67895 4.80784 4.90374 4.92578 5.00239 5.06050 5.11456 5.21047 5.50765 5.54274 5.70894 6.00420 6.49211 6.65550 6.79897 7.32080 8.85249 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.003837 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.846552 B = 7294.972322 C = 8111.061765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.183 3.817 3 H 0.005 0.995 4 C -0.519 4.519 5 H 0.036 0.964 6 C 0.019 3.981 7 N -0.944 5.944 8 Si 0.935 3.065 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.244 1.244 12 N -0.678 5.678 13 C 0.090 3.910 14 C -0.070 4.070 15 C -0.067 4.067 16 C -0.094 4.094 17 Br -0.036 7.036 18 C -0.077 4.077 19 C -0.101 4.101 20 C -0.032 4.032 21 Cl -0.069 7.069 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.266 0.734 26 H 0.336 0.664 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.168 0.832 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 0.200 25.097 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.023 0.977 4 C -0.557 4.557 5 H 0.054 0.946 6 C -0.179 4.179 7 N -0.583 5.583 8 Si 0.760 3.240 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.167 1.167 12 N -0.310 5.310 13 C -0.039 4.039 14 C -0.072 4.072 15 C -0.088 4.088 16 C -0.173 4.173 17 Br 0.050 6.950 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.060 4.060 21 Cl -0.040 7.040 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.165 0.835 30 H 0.185 0.815 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.758 -0.196 25.456 25.468 hybrid contribution 1.280 1.249 -1.414 2.280 sum 0.522 1.053 24.042 24.071 Atomic orbital electron populations 1.21748 0.96384 1.00499 0.99281 1.19480 0.93633 0.91974 0.87511 0.97720 1.21249 1.43311 0.94167 0.97007 0.94609 1.25833 0.94105 1.03188 0.94777 1.70042 1.47826 1.37884 1.02580 0.85915 0.79892 0.80507 0.77732 1.19622 1.21112 1.16736 1.60762 1.33012 1.32522 1.04654 1.21008 1.01126 0.93313 0.88451 1.19740 0.91460 0.99500 0.96498 1.21052 1.00522 0.95739 0.91475 1.21985 0.94809 1.04070 0.96451 1.96736 1.59136 1.87568 1.51562 1.21348 0.90245 0.98342 0.99758 1.21299 1.02069 0.97007 0.91700 1.21232 0.90467 1.01350 0.92935 1.98410 1.61491 1.87756 1.56331 0.93855 0.94397 0.92859 0.92448 0.84652 0.94643 0.89130 0.83468 0.81478 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.42 71.98 0.68 -4.33 16 2 C 0.18 8.39 2.26 44.17 0.10 8.49 16 3 H 0.01 0.24 4.95 -2.39 -0.01 0.22 16 4 C -0.52 -29.26 8.84 25.60 0.23 -29.04 16 5 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 6 C 0.02 1.11 5.47 84.66 0.46 1.57 16 7 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 8 Si 0.94 43.64 26.99 68.60 1.85 45.49 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.24 -10.48 6.82 99.48 0.68 -9.80 16 12 N -0.68 -27.32 6.29 -499.46 -3.14 -30.46 16 13 C 0.09 2.89 5.05 85.56 0.43 3.33 16 14 C -0.07 -1.93 5.40 -19.85 -0.11 -2.03 16 15 C -0.07 -1.61 9.41 22.28 0.21 -1.40 16 16 C -0.09 -1.92 6.22 22.31 0.14 -1.78 16 17 Br -0.04 -0.64 33.70 -20.37 -0.69 -1.32 16 18 C -0.08 -1.36 9.79 22.28 0.22 -1.15 16 19 C -0.10 -2.01 9.83 22.29 0.22 -1.79 16 20 C -0.03 -0.84 6.31 22.33 0.14 -0.70 16 21 Cl -0.07 -2.00 26.76 -2.72 -0.07 -2.08 16 22 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.05 1.84 7.35 -2.39 -0.02 1.83 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.34 14.39 7.56 -89.69 -0.68 13.71 16 27 H 0.04 1.18 7.27 -2.38 -0.02 1.17 16 28 H 0.09 2.65 7.22 -2.38 -0.02 2.64 16 29 H 0.15 3.24 8.03 -2.91 -0.02 3.22 16 30 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -63.08 297.88 1.42 -61.67 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.45 Total: 13.63 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 2.72 Total: -28.83 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.84 Total: -88.55 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.85 Total: 45.49 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.08 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.32 kcal Total: -63.08 1.42 -61.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.062 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds