Wall clock time and date at job start Tue Mar 31 2020 10:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47128 * 270.00154 * 3 2 1 5 5 H 1.48498 * 109.47106 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.47035 * 150.00394 * 3 2 1 7 7 C 1.37877 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00293 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00407 * 179.97438 * 10 9 7 12 12 O 1.21568 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.47799 * 120.00516 * 180.02562 * 11 10 9 14 14 C 1.39627 * 120.12531 * 359.97173 * 13 11 10 15 15 C 1.37896 * 119.88718 * 180.02562 * 14 13 11 16 16 C 1.38470 * 120.15062 * 0.02562 * 15 14 13 17 17 Br 1.89100 * 119.86910 * 180.27150 * 16 15 14 18 18 C 1.38565 * 120.26003 * 359.97438 * 16 15 14 19 19 Cl 1.73598 * 119.94356 * 180.02562 * 18 16 15 20 20 C 1.38040 * 120.10725 * 0.02562 * 18 16 15 21 21 H 0.96999 * 120.00039 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47022 * 60.00098 * 9 7 2 23 23 H 1.09003 * 109.47317 * 300.00372 * 9 7 2 24 24 H 0.97005 * 120.00198 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.05643 * 0.05178 * 14 13 11 26 26 H 1.08002 * 119.92596 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.07774 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8834 -0.0015 12 8 0.5587 -5.1055 0.0003 13 6 2.7144 -6.0068 -0.0021 14 6 4.0877 -5.7547 -0.0037 15 6 4.9794 -6.8065 -0.0048 16 6 4.5158 -8.1113 -0.0050 17 35 5.7457 -9.5477 0.0012 18 6 3.1542 -8.3686 -0.0035 19 17 2.5821 -10.0076 -0.0030 20 6 2.2521 -7.3237 -0.0023 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.1568 -3.4354 -0.0021 25 1 4.4509 -4.7376 -0.0035 26 1 6.0418 -6.6122 -0.0056 27 1 1.1910 -7.5248 -0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148724898.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:28 Heat of formation + Delta-G solvation = -23.543749 kcal Electronic energy + Delta-G solvation = -15433.798720 eV Core-core repulsion = 12456.374318 eV Total energy + Delta-G solvation = -2977.424403 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08076 -38.25051 -36.67431 -34.43913 -32.85716 -32.35348 -31.10449 -29.78467 -27.28540 -24.00002 -23.10289 -22.23043 -20.05270 -18.37547 -16.49296 -16.22034 -15.74749 -15.25588 -14.94698 -14.74553 -14.30987 -14.07189 -13.89113 -13.03827 -12.22837 -12.11762 -12.06600 -11.85231 -11.78533 -11.30589 -11.08978 -11.05451 -10.93114 -10.43778 -10.38515 -9.50756 -9.40747 -9.21543 -8.98173 -8.82714 -8.04763 -6.23937 -4.31752 0.37491 0.85460 1.15379 1.82066 2.78682 3.19926 3.26223 3.28280 3.77400 3.80064 4.28177 4.35036 4.74422 4.88301 4.93063 5.08233 5.12508 5.45286 5.65630 5.80535 5.99670 6.26392 7.17145 7.21780 7.39885 7.54508 7.86857 8.41767 8.63579 8.87164 9.34760 10.86096 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.002998 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.299152 B = 9336.491632 C =10220.643321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.699 5.699 11 C 0.537 3.463 12 O -0.543 6.543 13 C -0.091 4.091 14 C -0.080 4.080 15 C -0.086 4.086 16 C -0.076 4.076 17 Br -0.031 7.031 18 C -0.022 4.022 19 Cl -0.046 7.046 20 C -0.052 4.052 21 H 0.267 0.733 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.391 0.609 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.409 -19.104 -0.006 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.347 5.347 11 C 0.321 3.679 12 O -0.422 6.422 13 C -0.095 4.095 14 C -0.100 4.100 15 C -0.106 4.106 16 C -0.157 4.157 17 Br 0.055 6.945 18 C -0.050 4.050 19 Cl -0.016 7.016 20 C -0.073 4.073 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.225 0.775 25 H 0.164 0.836 26 H 0.165 0.835 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.776 -19.767 0.002 23.536 hybrid contribution 0.574 1.200 -0.011 1.330 sum 13.350 -18.566 -0.009 22.868 Atomic orbital electron populations 1.69970 1.06112 1.27465 1.48509 1.24953 0.94943 0.99514 0.94559 0.86391 0.79601 0.82517 0.78270 1.20409 1.20947 1.19717 1.21179 0.93265 0.90296 1.53732 0.91818 1.19220 0.88212 0.81627 0.98157 1.46456 1.11456 1.05816 1.70974 1.18058 0.87824 0.83195 0.78782 1.90771 1.15881 1.84724 1.50858 1.20436 0.94078 0.94203 1.00743 1.21552 0.91882 1.00057 0.96488 1.21045 1.01013 0.89557 0.98938 1.21945 0.91823 0.94237 1.07647 1.96753 1.57019 1.43302 1.97426 1.20644 0.91906 0.87365 1.05127 1.98393 1.88951 1.17630 1.96659 1.21194 1.00811 0.89656 0.95592 0.92330 0.95082 0.95066 0.77480 0.83629 0.83507 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.29 55.43 0.74 -24.57 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 15 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.55 -14.22 9.28 -34.44 -0.32 -14.54 15 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 15 9 C 0.25 6.30 5.43 -5.20 -0.03 6.27 15 10 N -0.70 -13.91 5.50 -62.44 -0.34 -14.26 15 11 C 0.54 10.36 7.77 -12.35 -0.10 10.26 15 12 O -0.54 -12.57 16.35 5.31 0.09 -12.49 15 13 C -0.09 -1.33 5.87 -104.97 -0.62 -1.95 15 14 C -0.08 -0.92 9.54 -39.19 -0.37 -1.29 15 15 C -0.09 -0.86 9.77 -39.62 -0.39 -1.25 15 16 C -0.08 -0.84 6.23 -39.38 -0.25 -1.09 15 17 Br -0.03 -0.30 32.50 -68.01 -2.21 -2.51 15 18 C -0.02 -0.26 6.31 -39.53 -0.25 -0.51 15 19 Cl -0.05 -0.51 27.72 -51.86 -1.44 -1.95 15 20 C -0.05 -0.72 9.37 -39.16 -0.37 -1.09 15 21 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.39 6.46 6.35 -40.82 -0.26 6.20 15 25 H 0.15 1.40 6.40 -52.49 -0.34 1.06 15 26 H 0.15 1.09 8.06 -52.49 -0.42 0.67 15 27 H 0.16 2.19 7.65 -52.49 -0.40 1.79 15 LS Contribution 281.90 15.07 4.25 4.25 Total: -1.00 -29.95 281.90 -8.52 -38.47 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -1.80 Total: 1.42 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.78 Total: -3.55 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.39 Total: -38.83 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.44 Total: -1.95 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.21 Total: -2.51 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.95 -8.52 -38.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148724898.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.928 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds