Wall clock time and date at job start Tue Mar 31 2020 10:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47128 * 270.00154 * 3 2 1 5 5 H 1.48498 * 109.47106 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.47035 * 150.00394 * 3 2 1 7 7 C 1.37877 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00293 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00407 * 179.97438 * 10 9 7 12 12 O 1.21568 * 119.99751 * 359.97438 * 11 10 9 13 13 C 1.47799 * 120.00516 * 180.02562 * 11 10 9 14 14 C 1.39627 * 120.12531 * 359.97173 * 13 11 10 15 15 C 1.37896 * 119.88718 * 180.02562 * 14 13 11 16 16 C 1.38470 * 120.15062 * 0.02562 * 15 14 13 17 17 Br 1.89100 * 119.86910 * 180.27150 * 16 15 14 18 18 C 1.38565 * 120.26003 * 359.97438 * 16 15 14 19 19 Cl 1.73598 * 119.94356 * 180.02562 * 18 16 15 20 20 C 1.38040 * 120.10725 * 0.02562 * 18 16 15 21 21 H 0.96999 * 120.00039 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47022 * 60.00098 * 9 7 2 23 23 H 1.09003 * 109.47317 * 300.00372 * 9 7 2 24 24 H 0.97005 * 120.00198 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.05643 * 0.05178 * 14 13 11 26 26 H 1.08002 * 119.92596 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.07774 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8834 -0.0015 12 8 0.5587 -5.1055 0.0003 13 6 2.7144 -6.0068 -0.0021 14 6 4.0877 -5.7547 -0.0037 15 6 4.9794 -6.8065 -0.0048 16 6 4.5158 -8.1113 -0.0050 17 35 5.7457 -9.5477 0.0012 18 6 3.1542 -8.3686 -0.0035 19 17 2.5821 -10.0076 -0.0030 20 6 2.2521 -7.3237 -0.0023 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.1568 -3.4354 -0.0021 25 1 4.4509 -4.7376 -0.0035 26 1 6.0418 -6.6122 -0.0056 27 1 1.1910 -7.5248 -0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148724898.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:28 Heat of formation + Delta-G solvation = -42.402610 kcal Electronic energy + Delta-G solvation = -15434.616502 eV Core-core repulsion = 12456.374318 eV Total energy + Delta-G solvation = -2978.242184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33886 -39.59586 -37.62731 -36.28475 -34.51369 -33.61714 -32.10828 -30.88516 -29.11084 -25.53573 -24.17820 -23.73251 -21.57544 -19.78439 -18.18503 -17.50117 -16.96502 -16.68721 -16.31075 -16.30962 -15.88065 -15.00832 -15.00506 -14.67083 -14.04455 -13.99025 -13.18491 -12.95284 -12.82958 -12.75677 -12.69969 -12.25112 -12.21974 -12.02079 -11.49359 -11.27599 -11.04400 -10.81106 -10.17744 -10.04973 -9.79982 -8.28563 -6.45179 -0.67030 -0.09288 0.27061 0.87580 1.45701 1.47590 1.57673 1.58721 2.23037 2.45927 2.50751 3.07044 3.44352 3.62573 3.84955 3.93388 4.02922 4.55648 4.63932 4.80934 4.99100 5.11085 5.22072 5.30173 5.41708 5.63373 5.82603 6.63090 6.75927 7.19672 7.34204 8.83443 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.002998 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.299152 B = 9336.491632 C =10220.643321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.264 3.736 10 N -0.693 5.693 11 C 0.538 3.462 12 O -0.592 6.592 13 C -0.110 4.110 14 C -0.066 4.066 15 C -0.072 4.072 16 C -0.073 4.073 17 Br -0.011 7.011 18 C -0.027 4.027 19 Cl -0.039 7.039 20 C -0.059 4.059 21 H 0.268 0.732 22 H -0.007 1.007 23 H -0.007 1.007 24 H 0.410 0.590 25 H 0.169 0.831 26 H 0.184 0.816 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.004 -19.218 0.004 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.106 0.894 9 C 0.142 3.858 10 N -0.342 5.342 11 C 0.326 3.674 12 O -0.474 6.474 13 C -0.113 4.113 14 C -0.085 4.085 15 C -0.091 4.091 16 C -0.154 4.154 17 Br 0.075 6.925 18 C -0.056 4.056 19 Cl -0.010 7.010 20 C -0.080 4.080 21 H 0.077 0.923 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.248 0.752 25 H 0.186 0.814 26 H 0.202 0.798 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.429 -19.917 0.011 25.819 hybrid contribution -0.511 1.065 -0.016 1.182 sum 15.918 -18.852 -0.004 24.673 Atomic orbital electron populations 1.70137 1.08270 1.28581 1.49859 1.26060 0.95768 1.03908 0.93884 0.85156 0.78559 0.76960 0.78550 1.19691 1.21224 1.17685 1.21595 0.94457 0.90261 1.52975 0.89394 1.18660 0.88632 0.83912 0.94639 1.46102 1.11622 1.05025 1.71467 1.18720 0.88034 0.83850 0.76833 1.90738 1.18443 1.85471 1.52775 1.19965 0.94477 0.92414 1.04491 1.21759 0.90253 1.01760 0.94774 1.21419 1.02471 0.88349 0.96880 1.22227 0.91656 0.95502 1.06013 1.96792 1.55862 1.42610 1.97245 1.20621 0.92299 0.87280 1.05428 1.98395 1.89055 1.16914 1.96640 1.21078 1.00627 0.90007 0.96246 0.92269 0.98925 0.98900 0.75193 0.81402 0.79840 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.54 15 2 C 0.00 0.19 5.46 84.65 0.46 0.66 15 3 Si 0.98 40.88 29.54 68.60 2.03 42.91 15 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 5 H -0.29 -11.93 7.11 99.48 0.71 -11.22 15 6 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 7 C -0.56 -28.89 9.28 25.60 0.24 -28.65 15 8 H 0.09 4.05 7.60 -2.91 -0.02 4.02 15 9 C 0.26 13.97 5.43 85.63 0.46 14.44 15 10 N -0.69 -27.91 5.50 -469.74 -2.58 -30.50 15 11 C 0.54 21.38 7.77 86.77 0.67 22.05 15 12 O -0.59 -29.10 16.35 -3.93 -0.06 -29.16 15 13 C -0.11 -3.16 5.87 -20.09 -0.12 -3.28 15 14 C -0.07 -1.33 9.54 22.52 0.21 -1.11 15 15 C -0.07 -1.16 9.77 22.24 0.22 -0.95 15 16 C -0.07 -1.42 6.23 22.40 0.14 -1.28 15 17 Br -0.01 -0.18 32.50 -20.37 -0.66 -0.85 15 18 C -0.03 -0.63 6.31 22.30 0.14 -0.49 15 19 Cl -0.04 -0.84 27.72 -2.72 -0.08 -0.92 15 20 C -0.06 -1.63 9.37 22.55 0.21 -1.42 15 21 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 22 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 15 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 15 24 H 0.41 12.98 6.35 -92.70 -0.59 12.39 15 25 H 0.17 2.58 6.40 -2.91 -0.02 2.56 15 26 H 0.18 1.70 8.06 -2.91 -0.02 1.67 15 27 H 0.14 4.22 7.65 -2.91 -0.02 4.20 15 Total: -1.00 -67.68 281.90 2.21 -65.47 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.64 Total: 7.61 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 2.64 Total: -0.03 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.30 Total: -85.03 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.66 Total: -0.85 kcal Total: -67.68 2.21 -65.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148724898.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.066 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds