Wall clock time and date at job start Tue Mar 31 2020 10:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46938 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47198 * 120.00527 * 8 6 4 11 11 H 1.48498 * 109.47360 * 240.00281 * 8 6 4 12 12 C 1.39673 * 120.00097 * 179.72133 * 2 1 3 13 13 C 1.38910 * 120.07913 * 180.02562 * 12 2 1 14 14 C 1.38103 * 119.92760 * 179.77008 * 13 12 2 15 15 C 1.38287 * 120.07099 * 0.50099 * 14 13 12 16 16 C 1.50700 * 119.92402 * 179.76895 * 15 14 13 17 17 N 1.46905 * 109.47004 * 269.97888 * 16 15 14 18 18 C 1.46771 * 111.00026 * 45.79548 * 17 16 15 19 19 C 1.52857 * 110.07610 * 168.47412 * 18 17 16 20 20 C 1.53231 * 109.38201 * 77.03661 * 19 18 17 21 21 C 1.53091 * 108.81724 * 285.43925 * 20 19 18 22 22 C 1.52892 * 109.34296 * 316.36144 * 21 20 19 23 23 C 1.52825 * 109.60395 * 112.57993 * 22 21 20 24 24 C 1.46984 * 110.99869 * 169.99964 * 17 16 15 25 25 C 1.38282 * 120.15072 * 359.74946 * 15 14 13 26 26 C 1.38100 * 120.07558 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 28 28 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 29 29 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 30 30 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 31 31 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 32 32 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.03581 * 359.97438 * 13 12 2 34 34 H 1.07994 * 119.96632 * 180.25170 * 14 13 12 35 35 H 1.08999 * 109.46886 * 29.97995 * 16 15 14 36 36 H 1.08994 * 109.47359 * 149.98140 * 16 15 14 37 37 H 1.09004 * 109.37132 * 288.65568 * 18 17 16 38 38 H 1.09001 * 109.37645 * 48.28366 * 18 17 16 39 39 H 1.08996 * 109.48146 * 317.06379 * 19 18 17 40 40 H 1.09001 * 109.50157 * 197.01874 * 19 18 17 41 41 H 1.09008 * 109.57909 * 165.64431 * 20 19 18 42 42 H 1.08997 * 109.69422 * 45.30867 * 20 19 18 43 43 H 1.09000 * 109.49327 * 196.40118 * 21 20 19 44 44 H 1.08997 * 109.51577 * 76.33070 * 21 20 19 45 45 H 1.09002 * 109.44855 * 352.53398 * 22 21 20 46 46 H 1.08998 * 109.45066 * 232.62146 * 22 21 20 47 47 H 1.09003 * 109.48821 * 164.00393 * 23 22 21 48 48 H 1.08996 * 109.51315 * 43.94161 * 23 22 21 49 49 H 1.09004 * 109.49656 * 242.56845 * 24 17 16 50 50 H 1.09004 * 109.49473 * 2.65802 * 24 17 16 51 51 H 1.08009 * 119.96013 * 180.02562 * 25 15 14 52 52 H 1.08004 * 120.03634 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 1 2.1068 1.0906 -2.2417 6 6 3.1331 2.8738 -1.6729 7 7 3.5563 3.6164 -0.6732 8 14 3.4525 3.4083 -3.4340 9 1 2.8793 2.4055 -4.3673 10 1 2.8156 4.7282 -3.6739 11 1 4.9161 3.5166 -3.6608 12 6 2.1634 -1.2096 0.0059 13 6 3.5525 -1.2115 0.0064 14 6 4.2398 -2.4092 0.0171 15 6 3.5468 -3.6059 0.0167 16 6 4.3002 -4.9110 0.0230 17 7 4.5508 -5.3385 -1.3599 18 6 5.0422 -4.2212 -2.1750 19 6 5.5639 -4.7390 -3.5152 20 6 4.3792 -5.0583 -4.4330 21 6 3.7229 -6.3574 -3.9584 22 6 4.8087 -7.3814 -3.6265 23 6 4.8169 -7.6508 -2.1222 24 6 5.4821 -6.4749 -1.3994 25 6 2.1640 -3.6077 0.0109 26 6 1.4704 -2.4135 0.0060 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8898 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6063 2.0296 0.5094 31 1 3.1478 1.1396 0.5181 32 1 4.0339 4.4418 -0.8505 33 1 4.0943 -0.2772 0.0019 34 1 5.3198 -2.4114 0.0216 35 1 5.2505 -4.7794 0.5405 36 1 3.7090 -5.6694 0.5362 37 1 4.2288 -3.5172 -2.3514 38 1 5.8482 -3.7139 -1.6448 39 1 6.1513 -5.6425 -3.3520 40 1 6.1897 -3.9776 -3.9808 41 1 4.7329 -5.1806 -5.4569 42 1 3.6534 -4.2462 -4.3919 43 1 3.0815 -6.7502 -4.7473 44 1 3.1255 -6.1596 -3.0685 45 1 5.7802 -6.9919 -3.9309 46 1 4.6072 -8.3101 -4.1604 47 1 5.3750 -8.5649 -1.9195 48 1 3.7927 -7.7636 -1.7670 49 1 6.3874 -6.1850 -1.9329 50 1 5.7380 -6.7711 -0.3821 51 1 1.6258 -4.5441 0.0110 52 1 0.3903 -2.4156 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158963223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:48 Heat of formation + Delta-G solvation = 26.020383 kcal Electronic energy + Delta-G solvation = -27406.830293 eV Core-core repulsion = 23984.590658 eV Total energy + Delta-G solvation = -3422.239635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88632 -39.88816 -37.52450 -35.69727 -34.69771 -33.70364 -31.90747 -31.66434 -29.66419 -28.98063 -26.99639 -26.92652 -25.61510 -23.94857 -23.02395 -22.83296 -21.91936 -20.98884 -19.87159 -18.66560 -18.12586 -17.23021 -16.90747 -16.52122 -16.28652 -15.87551 -15.69644 -15.31137 -15.01160 -14.94957 -14.75484 -14.50371 -14.34960 -14.12890 -14.01350 -13.89724 -13.24441 -13.18206 -13.11297 -12.98558 -12.67532 -12.58952 -12.55164 -12.41722 -12.31972 -12.17782 -11.86381 -11.74718 -11.71628 -11.62071 -11.40762 -11.26355 -11.03746 -10.83381 -10.66184 -10.39615 -9.65553 -8.99127 -8.37272 -7.79973 -6.38974 0.70530 0.84345 1.33726 1.35362 1.47721 2.32574 2.62664 2.95368 3.04236 3.36894 3.89353 4.00283 4.04733 4.08294 4.17997 4.24506 4.26071 4.31028 4.39873 4.44447 4.44723 4.61439 4.65923 4.70313 4.72429 4.76326 4.85156 4.86997 4.89988 4.96853 5.00716 5.02471 5.07976 5.11496 5.12864 5.15677 5.18785 5.31894 5.33287 5.38402 5.45099 5.52765 5.58087 5.60786 5.67288 5.69309 5.81750 5.93064 6.06006 6.19716 6.28159 6.39407 6.49191 6.81687 6.93166 7.32931 8.81595 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.003546 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.489918 B = 7895.254076 C = 8926.893338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.632 5.632 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.046 0.954 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.213 3.787 13 C -0.215 4.215 14 C -0.066 4.066 15 C -0.156 4.156 16 C 0.113 3.887 17 N -0.527 5.527 18 C 0.065 3.935 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.104 4.104 24 C 0.040 3.960 25 C -0.049 4.049 26 C -0.218 4.218 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.038 0.962 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.141 0.859 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -23.205 -1.937 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.340 5.340 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.109 3.891 13 C -0.238 4.238 14 C -0.085 4.085 15 C -0.159 4.159 16 C -0.014 4.014 17 N -0.251 5.251 18 C -0.063 4.063 19 C -0.175 4.175 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.143 4.143 24 C -0.087 4.087 25 C -0.068 4.068 26 C -0.240 4.240 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.159 0.841 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.515 -22.993 -2.086 23.137 hybrid contribution 0.945 1.790 -0.457 2.075 sum 2.460 -21.203 -2.542 21.497 Atomic orbital electron populations 1.21585 0.79425 1.02573 1.00719 1.46950 1.05611 1.03746 1.77714 1.18783 0.91057 0.80242 0.95376 1.21788 1.36268 1.06439 0.93350 0.93519 1.25759 0.95118 0.96295 1.01425 1.70041 1.39109 1.14766 1.32686 0.85480 0.78081 0.78219 0.79750 1.19660 1.19824 1.20202 1.18195 0.91559 0.86474 0.92919 1.20718 0.93218 0.98356 1.11493 1.20777 0.98862 0.91448 0.97414 1.19500 0.93972 0.93965 1.08464 1.20997 0.97844 0.93213 0.89316 1.62239 1.46174 1.06980 1.09744 1.22021 0.97373 0.93083 0.93792 1.22197 0.98355 1.02224 0.94703 1.21558 0.96998 0.97966 0.98277 1.21599 0.98147 0.94408 1.01073 1.21689 0.99132 0.98433 0.96395 1.21641 1.01335 0.96553 0.94725 1.22512 0.94314 0.91332 1.00551 1.20855 0.93371 0.97060 0.95473 1.20804 1.00015 0.90745 1.12473 0.94377 0.89724 0.92000 0.97198 0.97205 0.92378 0.88906 0.86718 0.94391 0.88938 0.93161 0.96150 0.88307 0.92420 0.92176 0.94181 0.93234 0.91026 0.91416 0.92042 0.90822 0.91798 0.91926 0.91720 0.84128 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.55 10.24 127.77 1.31 4.85 16 2 N -0.63 -28.21 2.99 -726.56 -2.17 -30.38 16 3 C 0.27 14.26 4.95 85.63 0.42 14.68 16 4 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 5 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 6 C 0.01 0.75 5.46 84.65 0.46 1.21 16 7 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 8 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.21 8.84 6.55 38.21 0.25 9.09 16 13 C -0.22 -9.15 9.20 22.40 0.21 -8.94 16 14 C -0.07 -2.26 8.07 22.25 0.18 -2.09 16 15 C -0.16 -4.53 4.18 -19.84 -0.08 -4.61 16 16 C 0.11 2.52 5.08 85.56 0.43 2.95 16 17 N -0.53 -11.25 3.12 -900.74 -2.81 -14.06 16 18 C 0.07 1.65 3.86 86.28 0.33 1.98 16 19 C -0.14 -2.93 5.32 30.62 0.16 -2.77 16 20 C -0.11 -2.39 5.77 30.70 0.18 -2.22 16 21 C -0.11 -2.22 5.50 30.59 0.17 -2.06 16 22 C -0.12 -1.82 5.46 30.50 0.17 -1.66 16 23 C -0.10 -1.50 5.69 30.61 0.17 -1.33 16 24 C 0.04 0.66 5.26 86.36 0.45 1.12 16 25 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 26 C -0.22 -7.31 9.21 22.40 0.21 -7.11 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.43 6.19 -2.39 -0.01 2.41 16 29 H 0.06 2.13 7.89 -2.39 -0.02 2.11 16 30 H 0.01 0.56 7.89 -2.39 -0.02 0.54 16 31 H 0.01 0.57 6.21 -2.39 -0.01 0.56 16 32 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.09 4.57 6.15 -2.91 -0.02 4.56 16 34 H 0.11 3.64 7.49 -2.91 -0.02 3.61 16 35 H 0.04 0.82 7.95 -2.39 -0.02 0.80 16 36 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 37 H 0.05 1.61 6.66 -2.38 -0.02 1.59 16 38 H 0.02 0.54 7.15 -2.39 -0.02 0.52 16 39 H 0.10 1.77 2.85 -2.39 -0.01 1.76 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.04 1.04 7.84 -2.39 -0.02 1.02 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 1.63 6.33 -2.39 -0.02 1.61 16 45 H 0.07 1.01 5.42 -2.39 -0.01 1.00 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 1.03 7.79 -2.39 -0.02 1.01 16 49 H 0.06 1.02 5.46 -2.38 -0.01 1.00 16 50 H 0.06 0.95 7.50 -2.38 -0.02 0.93 16 51 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 52 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 Total: -1.00 -63.05 383.16 3.70 -59.35 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.89 Total: 21.60 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 5.48 Total: -28.72 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -4.70 Total: -99.02 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.05 3.70 -59.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158963223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.366 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds