Wall clock time and date at job start Tue Mar 31 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 N 1.46902 * 109.47094 * 120.00004 * 2 1 3 5 5 C 1.46907 * 110.99670 * 275.00023 * 4 2 1 6 6 C 1.52993 * 109.46990 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47292 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47299 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00673 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00031 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99641 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00164 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47131 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46970 * 120.00035 * 12 10 8 15 15 H 1.48498 * 109.47402 * 240.00244 * 12 10 8 16 16 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 17 17 C 1.33362 * 125.19156 * 99.72067 * 16 2 1 18 18 C 1.38448 * 114.92950 * 179.86457 * 17 16 2 19 19 C 1.33483 * 114.89252 * 0.42577 * 18 17 16 20 20 Br 1.89096 * 125.20709 * 179.77241 * 19 18 17 21 21 S 1.75880 * 125.19354 * 280.02698 * 16 2 1 22 22 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 25 25 H 1.00892 * 111.00195 * 38.94542 * 4 2 1 26 26 H 1.09010 * 109.46631 * 299.99749 * 5 4 2 27 27 H 1.08994 * 109.47385 * 59.99624 * 5 4 2 28 28 H 1.09000 * 109.47081 * 299.99241 * 6 5 4 29 29 H 1.08994 * 109.47683 * 59.99416 * 6 5 4 30 30 H 1.09000 * 109.46532 * 299.99693 * 7 6 5 31 31 H 1.09000 * 109.46821 * 59.99521 * 7 6 5 32 32 H 0.97008 * 119.99364 * 180.02562 * 11 10 8 33 33 H 1.07998 * 122.53177 * 0.03692 * 17 16 2 34 34 H 1.08000 * 122.55519 * 180.20003 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5327 3.5742 7 6 2.6621 0.4206 4.7691 8 6 3.1676 -0.3236 5.9781 9 1 3.4164 -1.3718 5.9021 10 6 3.3123 0.3337 7.1815 11 7 3.0088 1.6099 7.2743 12 14 3.9381 -0.5890 8.6803 13 1 4.2057 -2.0032 8.3150 14 1 5.1925 0.0430 9.1625 15 1 2.9144 -0.5400 9.7549 16 6 2.0324 -0.7106 -1.2304 17 6 2.4621 -0.1120 -2.3420 18 6 2.8797 -0.9717 -3.3436 19 6 2.7804 -2.2696 -3.0477 20 35 3.2607 -3.6903 -4.1995 21 16 2.1343 -2.4559 -1.4225 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.4495 -1.4978 1.4101 26 1 2.7589 1.0463 2.1181 27 1 1.0871 0.6164 2.5525 28 1 1.9200 -1.3565 3.8031 29 1 3.5915 -0.9262 3.3683 30 1 3.3385 1.2441 4.5399 31 1 1.6668 0.8144 4.9751 32 1 3.1110 2.0724 8.1208 33 1 2.4852 0.9622 -2.4514 34 1 3.2538 -0.6193 -4.2935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167255346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:05 Heat of formation + Delta-G solvation = 13.939472 kcal Electronic energy + Delta-G solvation = -15697.800380 eV Core-core repulsion = 12995.711267 eV Total energy + Delta-G solvation = -2702.089113 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.57047 -36.86500 -34.03956 -32.39238 -31.55836 -29.55947 -27.91632 -26.00375 -24.19986 -22.66589 -21.66245 -20.31000 -19.27870 -17.24966 -16.36424 -15.82177 -15.21581 -14.83112 -14.36351 -14.29652 -13.75654 -13.30993 -13.09497 -12.87928 -12.55079 -12.26321 -12.13724 -11.66754 -11.60108 -11.41080 -11.00939 -10.87441 -10.84899 -10.61976 -10.51362 -10.47010 -9.73246 -9.37256 -9.06561 -8.71101 -8.64099 -8.35207 -8.30531 -6.00115 -4.02010 0.62877 0.91260 1.62047 1.80612 2.43859 3.31420 3.38907 3.43524 4.16081 4.47077 4.61974 4.93138 5.05756 5.13425 5.22837 5.36016 5.50831 5.55208 5.72283 5.76625 5.81558 5.90763 6.02789 6.15107 6.27000 6.67262 6.70392 7.10494 7.20233 7.46163 7.67910 7.81994 8.00256 8.43553 9.05420 9.62188 11.11382 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.002364 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.543492 B =11840.728998 C =12531.647969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.145 3.855 3 H 0.099 0.901 4 N -0.685 5.685 5 C 0.060 3.940 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.130 4.130 17 C -0.153 4.153 18 C -0.085 4.085 19 C -0.224 4.224 20 Br -0.002 7.002 21 S 0.184 5.816 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.339 0.661 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.145 0.855 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -7.168 -26.523 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.033 3.967 3 H 0.117 0.883 4 N -0.316 5.316 5 C -0.068 4.068 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.250 4.250 17 C -0.184 4.184 18 C -0.120 4.120 19 C -0.421 4.421 20 Br 0.081 6.919 21 S 0.448 5.552 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.157 0.843 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.163 0.837 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.123 -8.737 -26.058 27.661 hybrid contribution -0.288 1.247 0.388 1.338 sum -3.411 -7.490 -25.670 26.957 Atomic orbital electron populations 1.22529 0.95659 1.02673 1.02980 1.20082 0.92747 0.97249 0.86610 0.88286 1.60689 1.56586 1.10223 1.04062 1.22181 0.99395 0.95327 0.89868 1.21631 1.00195 0.98963 0.93753 1.19064 0.97035 0.94313 0.91120 1.21292 1.43403 0.96434 0.94511 0.92603 1.25033 0.95634 0.94890 0.98998 1.69979 1.49014 1.08993 1.25646 0.86542 0.78508 0.80096 0.82909 1.19695 1.21011 1.21052 1.24880 1.04208 0.96545 0.99338 1.19963 1.04285 1.01281 0.92847 1.20114 1.00359 0.90569 1.00927 1.26093 1.17421 0.97018 1.01533 1.96678 1.91660 1.42637 1.60899 1.84429 1.60840 1.04040 1.05882 0.91693 0.92192 0.91348 0.84269 0.91207 0.95306 0.93599 0.92454 0.96558 0.96803 0.93093 0.83732 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.14 37.16 0.34 -1.42 16 2 C 0.15 1.65 3.02 -68.86 -0.21 1.44 16 3 H 0.10 1.11 7.78 -51.93 -0.40 0.71 16 4 N -0.69 -9.41 6.01 -107.95 -0.65 -10.06 16 5 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 6 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 9 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.13 -1.44 5.45 -36.01 -0.20 -1.64 16 17 C -0.15 -1.54 10.04 -41.21 -0.41 -1.95 16 18 C -0.09 -0.84 10.11 -41.17 -0.42 -1.26 16 19 C -0.22 -2.40 6.97 29.07 0.20 -2.20 16 20 Br 0.00 -0.02 34.07 -68.01 -2.32 -2.34 16 21 S 0.18 2.05 23.07 -107.50 -2.48 -0.43 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 24 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 25 H 0.34 4.44 8.47 -39.30 -0.33 4.10 16 26 H 0.07 1.16 8.06 -51.92 -0.42 0.74 16 27 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -29.81 322.66 -11.13 -40.94 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.85 Total: -1.93 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.41 Total: -21.50 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.09 Total: -36.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.48 Total: -0.43 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.32 Total: -2.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.81 -11.13 -40.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167255346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.880 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds