Wall clock time and date at job start Tue Mar 31 2020 12:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 N 1.46902 * 109.47094 * 120.00004 * 2 1 3 5 5 C 1.46907 * 110.99670 * 275.00023 * 4 2 1 6 6 C 1.52993 * 109.46990 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47292 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47299 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00673 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00031 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99641 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00164 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47131 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46970 * 120.00035 * 12 10 8 15 15 H 1.48498 * 109.47402 * 240.00244 * 12 10 8 16 16 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 17 17 C 1.33362 * 125.19156 * 99.72067 * 16 2 1 18 18 C 1.38448 * 114.92950 * 179.86457 * 17 16 2 19 19 C 1.33483 * 114.89252 * 0.42577 * 18 17 16 20 20 Br 1.89096 * 125.20709 * 179.77241 * 19 18 17 21 21 S 1.75880 * 125.19354 * 280.02698 * 16 2 1 22 22 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 25 25 H 1.00892 * 111.00195 * 38.94542 * 4 2 1 26 26 H 1.09010 * 109.46631 * 299.99749 * 5 4 2 27 27 H 1.08994 * 109.47385 * 59.99624 * 5 4 2 28 28 H 1.09000 * 109.47081 * 299.99241 * 6 5 4 29 29 H 1.08994 * 109.47683 * 59.99416 * 6 5 4 30 30 H 1.09000 * 109.46532 * 299.99693 * 7 6 5 31 31 H 1.09000 * 109.46821 * 59.99521 * 7 6 5 32 32 H 0.97008 * 119.99364 * 180.02562 * 11 10 8 33 33 H 1.07998 * 122.53177 * 0.03692 * 17 16 2 34 34 H 1.08000 * 122.55519 * 180.20003 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5327 3.5742 7 6 2.6621 0.4206 4.7691 8 6 3.1676 -0.3236 5.9781 9 1 3.4164 -1.3718 5.9021 10 6 3.3123 0.3337 7.1815 11 7 3.0088 1.6099 7.2743 12 14 3.9381 -0.5890 8.6803 13 1 4.2057 -2.0032 8.3150 14 1 5.1925 0.0430 9.1625 15 1 2.9144 -0.5400 9.7549 16 6 2.0324 -0.7106 -1.2304 17 6 2.4621 -0.1120 -2.3420 18 6 2.8797 -0.9717 -3.3436 19 6 2.7804 -2.2696 -3.0477 20 35 3.2607 -3.6903 -4.1995 21 16 2.1343 -2.4559 -1.4225 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.4495 -1.4978 1.4101 26 1 2.7589 1.0463 2.1181 27 1 1.0871 0.6164 2.5525 28 1 1.9200 -1.3565 3.8031 29 1 3.5915 -0.9262 3.3683 30 1 3.3385 1.2441 4.5399 31 1 1.6668 0.8144 4.9751 32 1 3.1110 2.0724 8.1208 33 1 2.4852 0.9622 -2.4514 34 1 3.2538 -0.6193 -4.2935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167255346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:04 Heat of formation + Delta-G solvation = -2.666391 kcal Electronic energy + Delta-G solvation = -15698.520464 eV Core-core repulsion = 12995.711267 eV Total energy + Delta-G solvation = -2702.809197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44497 -37.92638 -35.81097 -33.96755 -32.61751 -30.93395 -28.73518 -27.71738 -25.20043 -24.21146 -22.62742 -21.98230 -20.14450 -18.48471 -18.12067 -16.80734 -16.54125 -16.39056 -15.71836 -15.45018 -14.69001 -14.51849 -14.32949 -13.88817 -13.72352 -13.61062 -13.34573 -13.17751 -12.80276 -12.70724 -12.47859 -12.43598 -12.21774 -11.79873 -11.67646 -11.53702 -11.36729 -11.27461 -11.08887 -10.55240 -9.58823 -9.48224 -9.34153 -8.20165 -6.30576 -0.18105 0.11648 0.81903 0.99557 1.40067 1.40608 1.53970 1.66399 2.41220 3.12200 3.13291 3.72289 4.06202 4.20819 4.30547 4.36853 4.41554 4.50498 4.68342 4.74865 4.81085 4.95050 5.03195 5.08317 5.16745 5.21647 5.26314 5.39238 5.53331 5.76527 5.87080 5.98965 6.27645 6.36567 6.86735 7.38689 8.91866 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.002364 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.543492 B =11840.728998 C =12531.647969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 H 0.102 0.898 4 N -0.689 5.689 5 C 0.076 3.924 6 C -0.093 4.093 7 C 0.026 3.974 8 C -0.542 4.542 9 H 0.058 0.942 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.277 1.277 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.085 4.085 19 C -0.234 4.234 20 Br 0.005 6.995 21 S 0.161 5.839 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.343 0.657 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.050 0.950 30 H -0.008 1.008 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.165 0.835 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -7.698 -27.351 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.036 3.964 3 H 0.120 0.880 4 N -0.320 5.320 5 C -0.053 4.053 6 C -0.131 4.131 7 C -0.012 4.012 8 C -0.580 4.580 9 H 0.076 0.924 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.788 3.212 13 H -0.187 1.187 14 H -0.204 1.204 15 H -0.203 1.203 16 C -0.261 4.261 17 C -0.179 4.179 18 C -0.119 4.119 19 C -0.430 4.430 20 Br 0.089 6.911 21 S 0.425 5.575 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.162 0.838 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.183 0.817 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.045 -9.280 -26.906 28.624 hybrid contribution -0.308 1.424 0.569 1.564 sum -3.352 -7.856 -26.338 27.688 Atomic orbital electron populations 1.22466 0.94424 1.02944 1.03428 1.20097 0.93732 0.97087 0.85501 0.88017 1.60574 1.57510 1.10049 1.03818 1.21845 0.99215 0.94957 0.89290 1.21375 1.00191 0.98092 0.93484 1.18962 0.94924 0.94469 0.92823 1.21736 1.43606 0.96823 0.95836 0.92400 1.25970 0.95718 0.95782 1.02397 1.70100 1.49951 1.10622 1.26708 0.85418 0.78011 0.79021 0.78727 1.18689 1.20382 1.20278 1.24856 1.05333 0.96319 0.99633 1.20246 1.03000 1.02404 0.92298 1.20393 0.99625 0.90192 1.01666 1.26252 1.17710 0.97733 1.01343 1.96680 1.91581 1.42448 1.60430 1.84470 1.61535 1.04688 1.06857 0.90198 0.92031 0.91889 0.83805 0.91599 0.94906 0.93158 0.93156 0.98957 0.98849 0.92777 0.81714 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.14 71.98 0.66 -2.46 16 2 C 0.15 3.12 3.02 44.17 0.13 3.26 16 3 H 0.10 2.11 7.78 -2.39 -0.02 2.09 16 4 N -0.69 -18.24 6.01 -495.43 -2.98 -21.22 16 5 C 0.08 2.44 5.48 86.30 0.47 2.91 16 6 C -0.09 -3.80 5.41 30.59 0.17 -3.63 16 7 C 0.03 1.36 4.97 29.85 0.15 1.51 16 8 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 9 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 10 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 11 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 12 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 C -0.14 -2.92 5.45 24.58 0.13 -2.78 16 17 C -0.15 -2.65 10.04 21.22 0.21 -2.43 16 18 C -0.08 -1.49 10.11 21.24 0.21 -1.27 16 19 C -0.23 -4.67 6.97 66.74 0.47 -4.20 16 20 Br 0.01 0.09 34.07 -20.37 -0.69 -0.60 16 21 S 0.16 3.42 23.07 -56.49 -1.30 2.12 16 22 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 24 H 0.06 1.20 7.45 -2.39 -0.02 1.19 16 25 H 0.34 8.65 8.47 -89.70 -0.76 7.89 16 26 H 0.07 2.18 8.06 -2.38 -0.02 2.16 16 27 H 0.03 1.03 7.44 -2.39 -0.02 1.01 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -63.32 322.66 0.97 -62.35 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.33 Total: 7.02 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 3.30 Total: -39.60 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -2.69 Total: -77.85 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.30 Total: 2.12 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.69 Total: -0.60 kcal Total: -63.32 0.97 -62.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167255346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.683 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds