Wall clock time and date at job start Tue Mar 31 2020 11:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47090 * 2 1 4 4 C 1.50703 * 109.46999 * 119.99542 * 2 1 3 5 5 H 1.07991 * 120.00476 * 119.99941 * 4 2 1 6 6 C 1.37884 * 119.99704 * 300.00457 * 4 2 1 7 7 N 1.31515 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99653 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47169 * 89.99881 * 8 6 4 10 10 H 1.48498 * 109.46932 * 209.99487 * 8 6 4 11 11 H 1.48495 * 109.47318 * 329.99608 * 8 6 4 12 12 N 1.46492 * 109.47245 * 239.99444 * 2 1 3 13 13 C 1.46500 * 120.00449 * 299.99962 * 12 2 1 14 14 C 1.34777 * 120.00222 * 120.00291 * 12 2 1 15 15 O 1.21704 * 119.99771 * 0.12998 * 14 12 2 16 16 C 1.46576 * 120.00255 * 180.13208 * 14 12 2 17 17 C 1.36668 * 125.44875 * 171.39274 * 16 14 12 18 18 C 1.37526 * 113.28538 * 179.71231 * 17 16 14 19 19 Br 1.89098 * 122.45756 * 180.29629 * 18 17 16 20 20 C 1.33859 * 115.08048 * 0.49338 * 18 17 16 21 21 S 1.70618 * 110.96135 * 359.51683 * 20 18 17 22 22 H 1.09003 * 109.46919 * 60.00730 * 1 2 3 23 23 H 1.09002 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47019 * 300.00506 * 1 2 3 25 25 H 0.96996 * 119.99761 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47406 * 263.46026 * 13 12 2 27 27 H 1.09005 * 109.46608 * 23.45655 * 13 12 2 28 28 H 1.08994 * 109.47710 * 143.45501 * 13 12 2 29 29 H 1.07997 * 123.35707 * 359.97438 * 17 16 14 30 30 H 1.07999 * 124.52113 * 179.78878 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.6303 -0.5436 4.4120 10 1 1.3443 -0.9485 5.1124 11 1 2.4879 -2.5650 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 1.6646 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.0893 1.1287 -1.8895 16 6 3.2795 -0.7260 -3.2814 17 6 3.9264 -0.1339 -4.3296 18 6 4.2780 -1.0193 -5.3216 19 35 5.1913 -0.4793 -6.8868 20 6 3.9226 -2.2906 -5.0995 21 16 3.1246 -2.4482 -3.5998 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7093 1.1620 3.4843 26 1 2.4718 -2.7349 -1.0744 27 1 0.7484 -2.3309 -0.8871 28 1 1.5101 -2.2577 -2.4942 29 1 4.1438 0.9230 -4.3727 30 1 4.1190 -3.1083 -5.7772 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:58 Heat of formation + Delta-G solvation = 6.492045 kcal Electronic energy + Delta-G solvation = -16485.594976 eV Core-core repulsion = 13647.349825 eV Total energy + Delta-G solvation = -2838.245152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.34926 -37.65141 -35.42637 -33.04586 -31.31447 -30.02392 -28.66879 -26.58285 -25.31291 -24.74593 -21.68537 -19.56653 -19.01194 -17.58692 -16.52462 -15.96534 -15.61476 -14.94287 -14.89387 -14.09661 -13.40485 -13.15048 -13.08108 -12.77066 -12.73991 -12.40199 -11.91539 -11.62820 -11.12827 -10.97741 -10.81921 -10.77631 -10.60135 -10.31433 -10.27556 -10.20508 -9.35038 -9.22851 -8.89118 -8.49304 -8.44552 -7.74789 -6.13360 -4.22062 0.50985 1.15944 1.54375 2.17714 2.24866 3.24224 3.31100 3.32100 3.66248 3.74279 4.34822 4.76606 5.01297 5.18460 5.22319 5.35803 5.67032 5.76566 5.90179 6.06531 6.10253 6.67714 6.73005 6.95090 7.27123 7.40057 7.63198 7.92526 8.08836 8.33879 8.71005 8.87230 9.44651 10.92047 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.003386 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.777845 B = 8266.331166 C = 8438.103965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.583 5.583 13 C 0.072 3.928 14 C 0.573 3.427 15 O -0.534 6.534 16 C -0.240 4.240 17 C -0.055 4.055 18 C -0.111 4.111 19 Br -0.042 7.042 20 C -0.252 4.252 21 S 0.273 5.727 22 H 0.013 0.987 23 H 0.031 0.969 24 H 0.096 0.904 25 H 0.264 0.736 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.159 0.841 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 -8.269 -17.328 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.074 4.074 14 C 0.359 3.641 15 O -0.414 6.414 16 C -0.361 4.361 17 C -0.088 4.088 18 C -0.203 4.203 19 Br 0.042 6.958 20 C -0.391 4.391 21 S 0.542 5.458 22 H 0.033 0.967 23 H 0.050 0.950 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.176 0.824 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.053 -8.569 -16.860 19.342 hybrid contribution 0.825 0.432 0.201 0.952 sum 4.878 -8.137 -16.659 19.171 Atomic orbital electron populations 1.22121 0.97880 0.99518 1.01159 1.19060 0.91075 0.94621 0.79328 0.91492 1.21289 1.32147 1.13191 0.90134 0.92157 1.24888 0.94821 0.94956 0.98991 1.69872 1.36128 1.22500 1.23923 0.86469 0.78702 0.79847 0.82233 1.20549 1.21079 1.19865 1.48177 1.48342 1.11375 1.23496 1.21795 1.03087 0.83795 0.98712 1.16917 0.79539 0.86199 0.81454 1.90803 1.58527 1.16005 1.76058 1.25019 1.11603 0.97570 1.01957 1.20491 0.96455 1.01301 0.90550 1.20414 1.08426 0.94861 0.96634 1.96657 1.75543 1.91680 1.31929 1.25989 1.05733 1.00107 1.07285 1.83877 1.48257 1.04640 1.09077 0.96747 0.94980 0.88523 0.92563 0.92113 0.88417 0.92685 0.82377 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.96 37.16 0.33 -3.08 16 2 C 0.26 6.43 2.62 -69.08 -0.18 6.24 16 3 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 4 C -0.53 -13.87 8.37 -34.44 -0.29 -14.16 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.58 -12.19 2.75 -176.84 -0.49 -12.67 16 13 C 0.07 1.15 8.12 59.85 0.49 1.63 16 14 C 0.57 12.07 7.64 -12.90 -0.10 11.97 16 15 O -0.53 -13.31 16.18 5.18 0.08 -13.22 16 16 C -0.24 -3.95 6.23 -36.79 -0.23 -4.18 16 17 C -0.06 -0.84 9.87 -40.41 -0.40 -1.24 16 18 C -0.11 -1.44 6.15 -41.38 -0.25 -1.69 16 19 Br -0.04 -0.47 33.86 -68.01 -2.30 -2.78 16 20 C -0.25 -2.83 10.74 29.19 0.31 -2.52 16 21 S 0.27 3.25 17.90 -107.50 -1.92 1.33 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.03 0.66 6.67 -51.93 -0.35 0.32 16 24 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.06 0.90 7.76 -51.93 -0.40 0.50 16 27 H 0.10 1.53 6.45 -51.93 -0.33 1.20 16 28 H 0.06 0.73 4.61 -23.24 -0.11 0.62 16 29 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 30 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -29.65 285.55 -7.80 -37.45 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -2.67 Total: -0.73 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.41 Total: -5.35 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.14 Total: -36.52 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.92 Total: 1.33 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.30 Total: -2.78 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.65 -7.80 -37.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.946 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds