Wall clock time and date at job start Tue Mar 31 2020 11:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47090 * 2 1 4 4 C 1.50703 * 109.46999 * 119.99542 * 2 1 3 5 5 H 1.07991 * 120.00476 * 119.99941 * 4 2 1 6 6 C 1.37884 * 119.99704 * 300.00457 * 4 2 1 7 7 N 1.31515 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99653 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47169 * 89.99881 * 8 6 4 10 10 H 1.48498 * 109.46932 * 209.99487 * 8 6 4 11 11 H 1.48495 * 109.47318 * 329.99608 * 8 6 4 12 12 N 1.46492 * 109.47245 * 239.99444 * 2 1 3 13 13 C 1.46500 * 120.00449 * 299.99962 * 12 2 1 14 14 C 1.34777 * 120.00222 * 120.00291 * 12 2 1 15 15 O 1.21704 * 119.99771 * 0.12998 * 14 12 2 16 16 C 1.46576 * 120.00255 * 180.13208 * 14 12 2 17 17 C 1.36668 * 125.44875 * 171.39274 * 16 14 12 18 18 C 1.37526 * 113.28538 * 179.71231 * 17 16 14 19 19 Br 1.89098 * 122.45756 * 180.29629 * 18 17 16 20 20 C 1.33859 * 115.08048 * 0.49338 * 18 17 16 21 21 S 1.70618 * 110.96135 * 359.51683 * 20 18 17 22 22 H 1.09003 * 109.46919 * 60.00730 * 1 2 3 23 23 H 1.09002 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47019 * 300.00506 * 1 2 3 25 25 H 0.96996 * 119.99761 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47406 * 263.46026 * 13 12 2 27 27 H 1.09005 * 109.46608 * 23.45655 * 13 12 2 28 28 H 1.08994 * 109.47710 * 143.45501 * 13 12 2 29 29 H 1.07997 * 123.35707 * 359.97438 * 17 16 14 30 30 H 1.07999 * 124.52113 * 179.78878 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.6303 -0.5436 4.4120 10 1 1.3443 -0.9485 5.1124 11 1 2.4879 -2.5650 3.7125 12 7 2.0184 -0.6907 -1.1960 13 6 1.6646 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.0893 1.1287 -1.8895 16 6 3.2795 -0.7260 -3.2814 17 6 3.9264 -0.1339 -4.3296 18 6 4.2780 -1.0193 -5.3216 19 35 5.1913 -0.4793 -6.8868 20 6 3.9226 -2.2906 -5.0995 21 16 3.1246 -2.4482 -3.5998 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7093 1.1620 3.4843 26 1 2.4718 -2.7349 -1.0744 27 1 0.7484 -2.3309 -0.8871 28 1 1.5101 -2.2577 -2.4942 29 1 4.1438 0.9230 -4.3727 30 1 4.1190 -3.1083 -5.7772 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:58 Heat of formation + Delta-G solvation = -11.619691 kcal Electronic energy + Delta-G solvation = -16486.380360 eV Core-core repulsion = 13647.349825 eV Total energy + Delta-G solvation = -2839.030536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91643 -38.82581 -37.16591 -34.92555 -32.52022 -31.55881 -29.93382 -28.00677 -27.30310 -26.05524 -23.22971 -21.11365 -20.17309 -19.04064 -18.38967 -17.50390 -16.89383 -16.64091 -16.40235 -15.62070 -14.73671 -14.54550 -14.48158 -14.17735 -14.13210 -13.73608 -13.53369 -13.12655 -12.95588 -12.76582 -12.69856 -12.19576 -12.10627 -11.81872 -11.62809 -11.27770 -11.19667 -10.94808 -10.52590 -10.06336 -9.51469 -9.32330 -8.14779 -6.31671 -0.61218 0.18635 0.42989 1.04364 1.23485 1.43759 1.45457 1.55019 2.13210 2.19330 2.46092 3.13956 3.53743 3.95678 4.10807 4.18487 4.50297 4.55643 4.67133 4.85340 4.87422 4.91769 4.96741 5.02523 5.43206 5.54522 5.63912 5.99645 6.12883 6.62968 6.75081 7.17187 7.40938 8.89940 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.003386 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.777845 B = 8266.331166 C = 8438.103965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.262 3.738 3 H 0.011 0.989 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.285 1.285 10 H -0.281 1.281 11 H -0.258 1.258 12 N -0.591 5.591 13 C 0.066 3.934 14 C 0.566 3.434 15 O -0.594 6.594 16 C -0.290 4.290 17 C -0.049 4.049 18 C -0.132 4.132 19 Br -0.027 7.027 20 C -0.225 4.225 21 S 0.348 5.652 22 H 0.020 0.980 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.265 0.735 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -11.671 -18.588 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.182 1.182 12 N -0.320 5.320 13 C -0.079 4.079 14 C 0.355 3.645 15 O -0.477 6.477 16 C -0.411 4.411 17 C -0.083 4.083 18 C -0.224 4.224 19 Br 0.057 6.943 20 C -0.364 4.364 21 S 0.617 5.383 22 H 0.039 0.961 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.160 0.840 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.414 -12.025 -18.140 22.207 hybrid contribution 0.755 1.462 0.462 1.709 sum 5.168 -10.563 -17.678 21.232 Atomic orbital electron populations 1.21912 0.96588 1.00608 1.00196 1.18664 0.92003 0.92295 0.80998 0.97077 1.21553 1.32148 1.13268 0.90834 0.91730 1.25726 0.94956 0.95600 1.02004 1.70019 1.37171 1.23838 1.24529 0.85447 0.77655 0.79387 0.78489 1.21086 1.20625 1.18184 1.48117 1.48276 1.13249 1.22362 1.22087 1.03815 0.80928 1.01025 1.17517 0.78754 0.85782 0.82494 1.90750 1.60594 1.18703 1.77682 1.24567 1.14531 1.01090 1.00869 1.20524 0.95664 1.01194 0.90954 1.20369 1.09824 0.95164 0.97056 1.96671 1.75251 1.91832 1.30594 1.26437 1.02787 1.00264 1.06957 1.83385 1.46976 0.99657 1.08318 0.96063 0.92693 0.91085 0.92579 0.90545 0.88016 0.89729 0.83987 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.96 71.98 0.64 -5.67 16 2 C 0.26 13.47 2.62 44.25 0.12 13.59 16 3 H 0.01 0.70 6.90 -2.39 -0.02 0.68 16 4 C -0.54 -28.62 8.37 25.60 0.21 -28.40 16 5 H 0.06 3.28 7.65 -2.92 -0.02 3.26 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.80 16 8 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 12 N -0.59 -24.96 2.75 -831.62 -2.29 -27.25 16 13 C 0.07 1.95 8.12 127.77 1.04 2.99 16 14 C 0.57 24.65 7.64 86.42 0.66 25.31 16 15 O -0.59 -31.70 16.18 -4.36 -0.07 -31.77 16 16 C -0.29 -9.37 6.23 24.08 0.15 -9.22 16 17 C -0.05 -1.48 9.87 21.73 0.21 -1.26 16 18 C -0.13 -3.12 6.15 21.11 0.13 -2.99 16 19 Br -0.03 -0.56 33.86 -20.37 -0.69 -1.25 16 20 C -0.22 -4.09 10.74 66.82 0.72 -3.38 16 21 S 0.35 7.01 17.90 -56.49 -1.01 6.00 16 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 2.26 6.67 -2.39 -0.02 2.25 16 24 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 25 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.08 2.04 7.76 -2.39 -0.02 2.02 16 27 H 0.10 2.95 6.45 -2.38 -0.02 2.93 16 28 H 0.09 1.96 4.61 -20.64 -0.10 1.87 16 29 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 30 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -68.22 285.55 3.63 -64.59 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.09 Total: 5.09 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.33 Total: -7.68 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.05 Total: -79.05 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.07 Total: -31.77 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.01 Total: 6.00 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.69 Total: -1.25 kcal Total: -68.22 3.63 -64.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds