Wall clock time and date at job start Tue Mar 31 2020 10:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99944 * 2 1 4 4 C 1.52994 * 109.47270 * 66.04571 * 3 2 1 5 5 C 1.52994 * 109.47343 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47496 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99812 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00098 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99933 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46888 * 60.00433 * 10 8 6 12 12 H 1.48498 * 109.47232 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47019 * 300.00317 * 10 8 6 14 14 C 1.46904 * 110.99884 * 236.04627 * 2 1 3 15 15 H 1.09000 * 109.53144 * 179.05363 * 14 2 1 16 16 C 1.53120 * 109.50264 * 58.95330 * 14 2 1 17 17 C 1.53123 * 109.21163 * 182.43665 * 16 14 2 18 18 C 1.53039 * 109.27546 * 57.62218 * 17 16 14 19 19 N 1.46842 * 109.52666 * 300.81951 * 18 17 16 20 20 C 1.46892 * 111.00192 * 185.84212 * 19 18 17 21 21 C 1.50706 * 109.47244 * 66.04829 * 20 19 18 22 22 C 1.38231 * 119.99888 * 269.72790 * 21 20 19 23 23 C 1.38230 * 120.00086 * 179.78758 * 22 21 20 24 24 C 1.38235 * 119.99856 * 0.46305 * 23 22 21 25 25 C 1.38234 * 120.00062 * 359.76618 * 24 23 22 26 26 C 1.38235 * 120.00189 * 0.02562 * 25 24 23 27 27 C 1.46848 * 111.19688 * 61.74516 * 19 18 17 28 28 H 1.09000 * 109.46885 * 183.95366 * 1 2 3 29 29 H 1.09001 * 109.46656 * 303.95352 * 1 2 3 30 30 H 1.08998 * 109.46977 * 63.95297 * 1 2 3 31 31 H 1.09000 * 109.47062 * 186.05034 * 3 2 1 32 32 H 1.09001 * 109.46900 * 306.04776 * 3 2 1 33 33 H 1.09000 * 109.47456 * 300.00222 * 4 3 2 34 34 H 1.08996 * 109.47301 * 59.99939 * 4 3 2 35 35 H 1.09000 * 109.47118 * 300.00541 * 5 4 3 36 36 H 1.09005 * 109.47253 * 60.00214 * 5 4 3 37 37 H 0.96994 * 119.99572 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.52427 * 62.49939 * 16 14 2 39 39 H 1.08995 * 109.52208 * 302.37258 * 16 14 2 40 40 H 1.08999 * 109.50194 * 177.56161 * 17 16 14 41 41 H 1.09002 * 109.50248 * 297.64565 * 17 16 14 42 42 H 1.08997 * 109.46051 * 60.83848 * 18 17 16 43 43 H 1.09006 * 109.46001 * 180.81597 * 18 17 16 44 44 H 1.09001 * 109.47233 * 186.04625 * 20 19 18 45 45 H 1.09000 * 109.47464 * 306.04297 * 20 19 18 46 46 H 1.08008 * 119.99816 * 359.97438 * 22 21 20 47 47 H 1.07998 * 120.00105 * 180.24935 * 23 22 21 48 48 H 1.08000 * 119.99895 * 179.78891 * 24 23 22 49 49 H 1.07999 * 120.00442 * 180.02562 * 25 24 23 50 50 H 1.07993 * 120.00657 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.46555 * 58.27446 * 27 19 18 52 52 H 1.08998 * 109.46337 * 178.25654 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8213 4.1616 2.6166 7 1 1.2583 3.6259 3.3667 8 6 2.2124 5.4635 2.8472 9 7 2.8984 6.1155 1.9340 10 14 1.7680 6.3011 4.4567 11 1 2.3588 5.5431 5.5887 12 1 2.3006 7.6872 4.4569 13 1 0.2907 6.3388 4.6036 14 6 1.9955 -0.7660 -1.1376 15 1 3.0850 -0.7364 -1.1240 16 6 1.4837 -0.1558 -2.4454 17 6 1.9863 -0.9949 -3.6235 18 6 1.5137 -2.4403 -3.4523 19 7 2.0311 -2.9795 -2.1883 20 6 1.7134 -4.4075 -2.0557 21 6 2.4570 -5.1875 -3.1092 22 6 1.8736 -5.4146 -4.3416 23 6 2.5574 -6.1262 -5.3094 24 6 3.8208 -6.6191 -5.0415 25 6 4.4024 -6.3960 -3.8075 26 6 3.7203 -5.6807 -2.8411 27 6 1.5237 -2.2186 -1.0393 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8525 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8309 33 1 0.5473 2.0845 1.4265 34 1 2.0658 1.5016 2.1491 35 1 3.2646 3.4582 1.2104 36 1 1.7463 4.0418 0.4875 37 1 3.1732 7.0315 2.0962 38 1 1.8543 0.8648 -2.5408 39 1 0.3938 -0.1487 -2.4420 40 1 1.5892 -0.5899 -4.5543 41 1 3.0757 -0.9684 -3.6506 42 1 0.4241 -2.4670 -3.4396 43 1 1.8821 -3.0436 -4.2822 44 1 2.0122 -4.7560 -1.0671 45 1 0.6410 -4.5546 -2.1840 46 1 0.8846 -5.0334 -4.5494 47 1 2.1032 -6.3002 -6.2737 48 1 4.3537 -7.1780 -5.7965 49 1 5.3896 -6.7807 -3.5982 50 1 4.1744 -5.5067 -1.8768 51 1 0.4341 -2.2464 -1.0378 52 1 1.8995 -2.6606 -0.1165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174949602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:35 Heat of formation + Delta-G solvation = 20.417325 kcal Electronic energy + Delta-G solvation = -26201.070112 eV Core-core repulsion = 22778.587510 eV Total energy + Delta-G solvation = -3422.482602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16805 -39.15907 -36.89097 -34.08682 -33.18883 -31.54668 -31.23650 -31.16168 -29.19440 -27.19686 -26.51101 -25.33095 -23.45970 -23.02012 -22.58693 -21.66795 -20.79810 -19.88928 -19.19386 -17.04752 -16.43377 -16.25670 -15.76032 -15.57737 -15.22711 -14.94984 -14.71630 -14.40613 -14.28711 -14.07003 -13.72855 -13.68265 -13.65234 -12.98616 -12.90861 -12.73592 -12.47784 -12.24492 -11.99199 -11.75414 -11.49316 -11.46215 -11.29770 -11.22153 -11.04088 -10.84091 -10.80766 -10.66750 -10.54478 -10.43842 -10.36754 -9.54587 -9.28392 -9.17128 -9.06757 -9.02206 -8.47948 -8.30328 -7.94879 -5.95940 -3.97819 1.04953 1.13819 3.35651 3.36008 3.39996 3.42843 3.81246 4.29874 4.47629 4.50944 4.55455 4.70928 4.73655 4.82007 4.83278 4.88595 5.02591 5.12485 5.21867 5.24467 5.34923 5.38861 5.38944 5.39797 5.46650 5.50110 5.61238 5.69588 5.72261 5.76182 5.77022 5.84774 5.88705 5.94635 6.04452 6.09665 6.17282 6.22376 6.24184 6.32971 6.35622 6.39186 6.71267 6.75253 6.80986 6.86524 6.92096 7.17281 7.42470 7.44784 7.72741 7.88437 8.04851 8.48300 9.09210 9.65775 11.15468 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.001962 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.505329 B =14264.505038 C =14308.963756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.090 3.910 15 H 0.089 0.911 16 C -0.157 4.157 17 C -0.111 4.111 18 C 0.053 3.947 19 N -0.531 5.531 20 C 0.094 3.906 21 C -0.074 4.074 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.097 4.097 27 C 0.066 3.934 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.035 0.965 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -26.136 -15.302 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.069 4.069 4 C -0.143 4.143 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.019 4.019 15 H 0.107 0.893 16 C -0.196 4.196 17 C -0.149 4.149 18 C -0.075 4.075 19 N -0.256 5.256 20 C -0.033 4.033 21 C -0.075 4.075 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.116 4.116 27 C -0.062 4.062 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.053 0.947 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.257 -26.128 -14.877 30.093 hybrid contribution -1.365 0.941 0.017 1.659 sum -2.623 -25.187 -14.860 29.361 Atomic orbital electron populations 1.22495 0.88429 1.01255 1.01000 1.62236 1.07497 1.15319 1.40728 1.22283 0.99522 0.86123 0.99010 1.21655 0.99966 0.98154 0.94494 1.19066 0.96228 0.89361 0.96892 1.21219 1.34707 0.97595 1.02106 0.92760 1.25033 0.95275 0.97532 0.96723 1.69958 1.38308 1.11320 1.34024 0.86660 0.78710 0.78476 0.84154 1.20229 1.21338 1.20314 1.21682 1.00375 0.91908 0.87982 0.89303 1.22308 1.01044 1.00161 0.96125 1.21499 1.01828 0.93791 0.97822 1.22185 0.96746 0.96213 0.92347 1.61815 1.60130 1.01196 1.02433 1.21017 0.96931 0.87512 0.97850 1.19751 0.95130 0.97675 0.94902 1.21059 0.99925 0.99099 0.93301 1.21103 0.95254 0.98550 0.99149 1.21148 0.95639 1.00240 0.97085 1.21172 0.99913 0.99091 0.93752 1.21057 0.93981 0.96915 0.99636 1.22120 0.97266 0.93625 0.93191 0.92172 0.90693 0.95665 0.91305 0.95191 0.93506 0.92645 0.96623 0.96908 0.93021 0.91293 0.91993 0.91752 0.91032 0.95276 0.90423 0.89694 0.94079 0.86480 0.86262 0.86302 0.86110 0.85854 0.94720 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.62 60.07 0.52 0.74 16 2 N -0.54 -8.03 4.75 -234.78 -1.12 -9.14 16 3 C 0.06 1.02 4.40 -3.83 -0.02 1.00 16 4 C -0.10 -2.21 5.08 -26.74 -0.14 -2.35 16 5 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 C 0.09 1.15 2.39 -67.62 -0.16 0.99 16 15 H 0.09 1.25 8.04 -51.93 -0.42 0.83 16 16 C -0.16 -1.88 4.59 -26.61 -0.12 -2.01 16 17 C -0.11 -1.15 6.10 -26.65 -0.16 -1.31 16 18 C 0.05 0.51 5.17 -3.84 -0.02 0.49 16 19 N -0.53 -5.41 4.65 -236.11 -1.10 -6.51 16 20 C 0.09 0.82 5.12 -4.98 -0.03 0.80 16 21 C -0.07 -0.65 4.89 -104.62 -0.51 -1.16 16 22 C -0.12 -0.93 7.89 -39.59 -0.31 -1.25 16 23 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 27 C 0.07 0.73 4.56 -3.83 -0.02 0.71 16 28 H 0.06 0.72 6.31 -51.93 -0.33 0.39 16 29 H 0.07 1.11 6.30 -51.93 -0.33 0.78 16 30 H 0.02 0.34 6.23 -51.93 -0.32 0.01 16 31 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 32 H 0.03 0.54 7.00 -51.93 -0.36 0.17 16 33 H 0.05 0.97 6.47 -51.93 -0.34 0.64 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.91 6.89 -51.93 -0.36 0.55 16 39 H 0.06 0.75 6.27 -51.93 -0.33 0.42 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.73 5.77 -51.93 -0.30 0.43 16 44 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 45 H 0.04 0.34 8.06 -51.93 -0.42 -0.08 16 46 H 0.12 0.82 7.97 -52.48 -0.42 0.40 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 51 H 0.03 0.38 6.38 -51.93 -0.33 0.05 16 52 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -30.54 394.51 -12.91 -43.45 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -9.26 Total: -2.27 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -3.09 Total: -21.84 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -1.48 Total: -42.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.54 -12.91 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174949602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.865 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds