Wall clock time and date at job start Tue Mar 31 2020 10:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99944 * 2 1 4 4 C 1.52994 * 109.47270 * 66.04571 * 3 2 1 5 5 C 1.52994 * 109.47343 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47496 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99812 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00098 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99933 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46888 * 60.00433 * 10 8 6 12 12 H 1.48498 * 109.47232 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47019 * 300.00317 * 10 8 6 14 14 C 1.46904 * 110.99884 * 236.04627 * 2 1 3 15 15 H 1.09000 * 109.53144 * 179.05363 * 14 2 1 16 16 C 1.53120 * 109.50264 * 58.95330 * 14 2 1 17 17 C 1.53123 * 109.21163 * 182.43665 * 16 14 2 18 18 C 1.53039 * 109.27546 * 57.62218 * 17 16 14 19 19 N 1.46842 * 109.52666 * 300.81951 * 18 17 16 20 20 C 1.46892 * 111.00192 * 185.84212 * 19 18 17 21 21 C 1.50706 * 109.47244 * 66.04829 * 20 19 18 22 22 C 1.38231 * 119.99888 * 269.72790 * 21 20 19 23 23 C 1.38230 * 120.00086 * 179.78758 * 22 21 20 24 24 C 1.38235 * 119.99856 * 0.46305 * 23 22 21 25 25 C 1.38234 * 120.00062 * 359.76618 * 24 23 22 26 26 C 1.38235 * 120.00189 * 0.02562 * 25 24 23 27 27 C 1.46848 * 111.19688 * 61.74516 * 19 18 17 28 28 H 1.09000 * 109.46885 * 183.95366 * 1 2 3 29 29 H 1.09001 * 109.46656 * 303.95352 * 1 2 3 30 30 H 1.08998 * 109.46977 * 63.95297 * 1 2 3 31 31 H 1.09000 * 109.47062 * 186.05034 * 3 2 1 32 32 H 1.09001 * 109.46900 * 306.04776 * 3 2 1 33 33 H 1.09000 * 109.47456 * 300.00222 * 4 3 2 34 34 H 1.08996 * 109.47301 * 59.99939 * 4 3 2 35 35 H 1.09000 * 109.47118 * 300.00541 * 5 4 3 36 36 H 1.09005 * 109.47253 * 60.00214 * 5 4 3 37 37 H 0.96994 * 119.99572 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.52427 * 62.49939 * 16 14 2 39 39 H 1.08995 * 109.52208 * 302.37258 * 16 14 2 40 40 H 1.08999 * 109.50194 * 177.56161 * 17 16 14 41 41 H 1.09002 * 109.50248 * 297.64565 * 17 16 14 42 42 H 1.08997 * 109.46051 * 60.83848 * 18 17 16 43 43 H 1.09006 * 109.46001 * 180.81597 * 18 17 16 44 44 H 1.09001 * 109.47233 * 186.04625 * 20 19 18 45 45 H 1.09000 * 109.47464 * 306.04297 * 20 19 18 46 46 H 1.08008 * 119.99816 * 359.97438 * 22 21 20 47 47 H 1.07998 * 120.00105 * 180.24935 * 23 22 21 48 48 H 1.08000 * 119.99895 * 179.78891 * 24 23 22 49 49 H 1.07999 * 120.00442 * 180.02562 * 25 24 23 50 50 H 1.07993 * 120.00657 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.46555 * 58.27446 * 27 19 18 52 52 H 1.08998 * 109.46337 * 178.25654 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8213 4.1616 2.6166 7 1 1.2583 3.6259 3.3667 8 6 2.2124 5.4635 2.8472 9 7 2.8984 6.1155 1.9340 10 14 1.7680 6.3011 4.4567 11 1 2.3588 5.5431 5.5887 12 1 2.3006 7.6872 4.4569 13 1 0.2907 6.3388 4.6036 14 6 1.9955 -0.7660 -1.1376 15 1 3.0850 -0.7364 -1.1240 16 6 1.4837 -0.1558 -2.4454 17 6 1.9863 -0.9949 -3.6235 18 6 1.5137 -2.4403 -3.4523 19 7 2.0311 -2.9795 -2.1883 20 6 1.7134 -4.4075 -2.0557 21 6 2.4570 -5.1875 -3.1092 22 6 1.8736 -5.4146 -4.3416 23 6 2.5574 -6.1262 -5.3094 24 6 3.8208 -6.6191 -5.0415 25 6 4.4024 -6.3960 -3.8075 26 6 3.7203 -5.6807 -2.8411 27 6 1.5237 -2.2186 -1.0393 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8525 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8309 33 1 0.5473 2.0845 1.4265 34 1 2.0658 1.5016 2.1491 35 1 3.2646 3.4582 1.2104 36 1 1.7463 4.0418 0.4875 37 1 3.1732 7.0315 2.0962 38 1 1.8543 0.8648 -2.5408 39 1 0.3938 -0.1487 -2.4420 40 1 1.5892 -0.5899 -4.5543 41 1 3.0757 -0.9684 -3.6506 42 1 0.4241 -2.4670 -3.4396 43 1 1.8821 -3.0436 -4.2822 44 1 2.0122 -4.7560 -1.0671 45 1 0.6410 -4.5546 -2.1840 46 1 0.8846 -5.0334 -4.5494 47 1 2.1032 -6.3002 -6.2737 48 1 4.3537 -7.1780 -5.7965 49 1 5.3896 -6.7807 -3.5982 50 1 4.1744 -5.5067 -1.8768 51 1 0.4341 -2.2464 -1.0378 52 1 1.8995 -2.6606 -0.1165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174949602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:34 Heat of formation + Delta-G solvation = 3.663398 kcal Electronic energy + Delta-G solvation = -26201.796616 eV Core-core repulsion = 22778.587510 eV Total energy + Delta-G solvation = -3423.209107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.00024 -39.93328 -37.96238 -35.78130 -34.43565 -33.20398 -32.02721 -31.74518 -30.36183 -28.71799 -27.28915 -26.84636 -24.65682 -24.00124 -23.43264 -22.67247 -21.74634 -21.40320 -20.23170 -18.46577 -17.64742 -17.29391 -16.72175 -16.47449 -16.35086 -16.15456 -16.05307 -15.56180 -15.29212 -15.09792 -14.81439 -14.69097 -14.25780 -14.24706 -14.04341 -13.77418 -13.57361 -13.36905 -13.27959 -13.12601 -12.72674 -12.72393 -12.56259 -12.46398 -12.25904 -12.12954 -11.94761 -11.80607 -11.71133 -11.68499 -11.48979 -11.34677 -11.27312 -11.01205 -10.54049 -9.75282 -9.66962 -9.28102 -9.12684 -8.19509 -6.30611 0.46060 0.55925 1.39797 1.43300 1.51197 2.40979 2.60927 3.00505 3.13217 3.32833 3.79073 3.80597 3.85861 3.99028 4.01566 4.11954 4.20927 4.24265 4.29246 4.34853 4.37641 4.41196 4.48705 4.55444 4.59918 4.63718 4.68683 4.70438 4.74622 4.76494 4.83377 4.87861 4.96468 5.00224 5.03271 5.10049 5.10536 5.16111 5.21471 5.22603 5.27344 5.36396 5.52766 5.60948 5.67879 5.74857 5.74998 5.86366 6.02678 6.06214 6.14742 6.17970 6.25918 6.29132 6.85920 7.38316 8.92190 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.001962 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.505329 B =14264.505038 C =14308.963756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.072 3.928 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.092 3.908 15 H 0.074 0.926 16 C -0.152 4.152 17 C -0.107 4.107 18 C 0.057 3.943 19 N -0.539 5.539 20 C 0.097 3.903 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.113 4.113 27 C 0.075 3.925 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.010 1.010 36 H -0.011 1.011 37 H 0.263 0.737 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.127 0.873 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.124 0.876 51 H 0.040 0.960 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -27.598 -15.467 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.056 4.056 4 C -0.127 4.127 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.017 4.017 15 H 0.092 0.908 16 C -0.191 4.191 17 C -0.145 4.145 18 C -0.070 4.070 19 N -0.264 5.264 20 C -0.030 4.030 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.052 4.052 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.145 0.855 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.153 0.847 50 H 0.142 0.858 51 H 0.059 0.941 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.277 -27.618 -15.048 31.534 hybrid contribution -1.011 1.353 0.005 1.689 sum -3.288 -26.265 -15.043 30.446 Atomic orbital electron populations 1.22519 0.87307 1.02542 1.00636 1.62158 1.08511 1.13409 1.42206 1.21962 0.99175 0.87694 0.96792 1.21396 0.99793 0.95195 0.96290 1.18963 0.94582 0.92227 0.95361 1.21659 1.34983 0.98351 1.03075 0.92258 1.26013 0.94964 0.98321 1.00719 1.70096 1.39240 1.11770 1.36259 0.85486 0.78913 0.77278 0.79282 1.19178 1.20768 1.19131 1.21665 0.99513 0.92927 0.87612 0.90777 1.22233 1.01059 0.99438 0.96374 1.21472 1.01252 0.94189 0.97607 1.22150 0.97027 0.95547 0.92286 1.61784 1.60445 1.01975 1.02226 1.21013 0.97366 0.86421 0.98157 1.19815 0.95352 0.98178 0.95297 1.21233 1.00450 0.99253 0.93189 1.21397 0.95351 0.98081 0.99849 1.21454 0.95830 1.00095 0.97362 1.21421 1.00611 0.98956 0.93870 1.21212 0.94319 0.97539 1.00087 1.21961 0.97425 0.92236 0.93628 0.89905 0.91889 0.95286 0.92017 0.95576 0.93010 0.93067 0.99153 0.99242 0.92784 0.93005 0.91680 0.90430 0.91947 0.94664 0.89857 0.89463 0.93365 0.85525 0.84434 0.84432 0.84743 0.85798 0.94142 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.62 127.69 1.10 1.56 16 2 N -0.54 -15.95 4.75 -896.69 -4.26 -20.22 16 3 C 0.07 2.58 4.40 86.30 0.38 2.96 16 4 C -0.09 -3.82 5.08 30.59 0.16 -3.66 16 5 C 0.03 1.43 4.97 29.85 0.15 1.58 16 6 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 10 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.09 2.31 2.39 44.97 0.11 2.41 16 15 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 16 C -0.15 -3.54 4.59 30.68 0.14 -3.40 16 17 C -0.11 -2.08 6.10 30.65 0.19 -1.90 16 18 C 0.06 1.01 5.17 86.33 0.45 1.46 16 19 N -0.54 -10.25 4.65 -900.92 -4.19 -14.44 16 20 C 0.10 1.56 5.12 85.56 0.44 2.00 16 21 C -0.09 -1.40 4.89 -19.86 -0.10 -1.50 16 22 C -0.12 -1.78 7.89 22.27 0.18 -1.61 16 23 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 24 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 26 C -0.11 -1.86 9.70 22.27 0.22 -1.64 16 27 C 0.08 1.57 4.56 86.33 0.39 1.96 16 28 H 0.08 1.79 6.31 -2.39 -0.02 1.77 16 29 H 0.06 1.80 6.30 -2.39 -0.02 1.78 16 30 H 0.03 0.74 6.23 -2.39 -0.01 0.72 16 31 H 0.06 2.29 8.00 -2.39 -0.02 2.27 16 32 H 0.03 0.96 7.00 -2.39 -0.02 0.94 16 33 H 0.05 2.16 6.47 -2.39 -0.02 2.15 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.05 1.38 6.89 -2.39 -0.02 1.36 16 39 H 0.06 1.48 6.27 -2.39 -0.01 1.47 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 1.41 5.77 -2.38 -0.01 1.39 16 44 H 0.09 1.33 7.93 -2.39 -0.02 1.31 16 45 H 0.05 0.70 8.06 -2.39 -0.02 0.68 16 46 H 0.13 1.52 7.97 -2.91 -0.02 1.49 16 47 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 49 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 50 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 51 H 0.04 0.80 6.38 -2.39 -0.02 0.79 16 52 H 0.08 1.72 8.01 -2.39 -0.02 1.70 16 Total: -1.00 -65.62 394.51 -0.12 -65.73 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.86 Total: 15.04 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 5.16 Total: -35.57 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -8.16 Total: -92.28 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.62 -0.12 -65.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174949602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.398 kcal (2) G-P(sol) polarization free energy of solvation -65.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds