Wall clock time and date at job start Tue Mar 31 2020 10:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00177 * 2 1 4 4 C 1.52999 * 109.47117 * 293.95926 * 3 2 1 5 5 C 1.53004 * 109.47158 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47279 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00190 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00106 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47032 * 59.99957 * 10 8 6 12 12 H 1.48499 * 109.47303 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47222 * 300.00227 * 10 8 6 14 14 C 1.46895 * 111.00449 * 123.95864 * 2 1 3 15 15 H 1.09001 * 109.54009 * 185.94800 * 14 2 1 16 16 C 1.53123 * 109.50104 * 306.04293 * 14 2 1 17 17 C 1.53120 * 109.21163 * 177.56299 * 16 14 2 18 18 C 1.53048 * 109.27450 * 302.43753 * 17 16 14 19 19 N 1.46848 * 109.57298 * 59.08726 * 18 17 16 20 20 C 1.46892 * 110.99938 * 174.18963 * 19 18 17 21 21 C 1.50706 * 109.47366 * 294.20995 * 20 19 18 22 22 C 1.38236 * 119.99898 * 269.72675 * 21 20 19 23 23 C 1.38241 * 119.99717 * 179.76066 * 22 21 20 24 24 C 1.38231 * 119.99709 * 0.51346 * 23 22 21 25 25 C 1.38229 * 120.00306 * 359.74002 * 24 23 22 26 26 C 1.38227 * 120.00138 * 0.02562 * 25 24 23 27 27 C 1.46842 * 111.19688 * 298.28804 * 19 18 17 28 28 H 1.09005 * 109.46720 * 296.04561 * 1 2 3 29 29 H 1.08997 * 109.47499 * 56.03968 * 1 2 3 30 30 H 1.08994 * 109.47197 * 176.04543 * 1 2 3 31 31 H 1.08998 * 109.46894 * 53.95480 * 3 2 1 32 32 H 1.08996 * 109.47145 * 173.95646 * 3 2 1 33 33 H 1.09005 * 109.47249 * 299.99543 * 4 3 2 34 34 H 1.08996 * 109.47342 * 59.99840 * 4 3 2 35 35 H 1.09005 * 109.46536 * 299.99818 * 5 4 3 36 36 H 1.08996 * 109.47257 * 59.99627 * 5 4 3 37 37 H 0.97002 * 120.00291 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.52319 * 297.50093 * 16 14 2 39 39 H 1.08995 * 109.52318 * 57.62774 * 16 14 2 40 40 H 1.09000 * 109.50719 * 62.32149 * 17 16 14 41 41 H 1.09003 * 109.50116 * 182.43702 * 17 16 14 42 42 H 1.08999 * 109.41208 * 299.06816 * 18 17 16 43 43 H 1.08998 * 109.44995 * 179.12696 * 18 17 16 44 44 H 1.08998 * 109.47248 * 54.20814 * 20 19 18 45 45 H 1.09002 * 109.47520 * 174.21343 * 20 19 18 46 46 H 1.07997 * 120.00389 * 0.02562 * 22 21 20 47 47 H 1.07994 * 119.99628 * 180.23075 * 23 22 21 48 48 H 1.08001 * 119.99786 * 179.72389 * 24 23 22 49 49 H 1.08007 * 119.99905 * 179.97438 * 25 24 23 50 50 H 1.08007 * 120.00519 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.46203 * 301.72398 * 27 19 18 52 52 H 1.09006 * 109.45199 * 181.75359 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1803 3.4857 -1.3185 6 6 1.8222 4.1612 -2.6171 7 1 1.2598 3.6253 -3.3675 8 6 2.2126 5.4633 -2.8474 9 7 2.8970 6.1160 -1.9335 10 14 1.7694 6.3005 -4.4574 11 1 0.2923 6.3372 -4.6060 12 1 2.3020 7.6866 -4.4576 13 1 2.3620 5.5428 -5.5888 14 6 1.9955 -0.7660 1.1374 15 1 3.0800 -0.6633 1.1754 16 6 1.3859 -0.2346 2.4377 17 6 1.8919 -1.0764 3.6124 18 6 1.5282 -2.5441 3.3757 19 7 2.1355 -3.0053 2.1207 20 6 1.9221 -4.4462 1.9310 21 6 2.6658 -5.2089 2.9970 22 6 3.9691 -5.6131 2.7756 23 6 4.6530 -6.3084 3.7553 24 6 4.0300 -6.6086 4.9522 25 6 2.7251 -6.2090 5.1715 26 6 2.0428 -5.5095 4.1938 27 6 1.6275 -2.2424 0.9734 28 1 -0.3633 0.4513 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.0657 1.5016 -2.1492 34 1 0.5471 2.0845 -1.4264 35 1 1.7463 4.0418 -0.4874 36 1 3.2645 3.4582 -1.2105 37 1 3.1721 7.0320 -2.0957 38 1 1.6814 0.8048 2.5804 39 1 0.2992 -0.3002 2.3840 40 1 2.9747 -0.9787 3.6904 41 1 1.4272 -0.7296 4.5354 42 1 0.4445 -2.6432 3.3128 43 1 1.9007 -3.1483 4.2030 44 1 0.8573 -4.6682 2.0015 45 1 2.2906 -4.7419 0.9487 46 1 4.4545 -5.3820 1.8389 47 1 5.6724 -6.6209 3.5838 48 1 4.5628 -7.1557 5.7159 49 1 2.2382 -6.4440 6.1066 50 1 1.0230 -5.1976 4.3650 51 1 0.5434 -2.3430 0.9217 52 1 2.0722 -2.6277 0.0558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174949624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:37 Heat of formation + Delta-G solvation = 20.386020 kcal Electronic energy + Delta-G solvation = -26192.882781 eV Core-core repulsion = 22770.398822 eV Total energy + Delta-G solvation = -3422.483959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16150 -39.15178 -36.89477 -34.09678 -33.18076 -31.52857 -31.24671 -31.15731 -29.20340 -27.15919 -26.54248 -25.32897 -23.43869 -23.03779 -22.59421 -21.66300 -20.79214 -19.86386 -19.21824 -17.04432 -16.42485 -16.26011 -15.75202 -15.57059 -15.23607 -14.95453 -14.71436 -14.40370 -14.28738 -14.08173 -13.69398 -13.68322 -13.66084 -12.99490 -12.89625 -12.73220 -12.47323 -12.24094 -11.99028 -11.75454 -11.49803 -11.46027 -11.29641 -11.21947 -11.05925 -10.82940 -10.79465 -10.66236 -10.54498 -10.45137 -10.36702 -9.54592 -9.28225 -9.16895 -9.06683 -9.02109 -8.47898 -8.30350 -7.94999 -5.95885 -3.97804 1.05166 1.13988 3.35876 3.36018 3.40023 3.42868 3.81358 4.29992 4.47868 4.51044 4.55754 4.71234 4.73861 4.81840 4.83345 4.88544 5.02859 5.13439 5.22099 5.24989 5.35312 5.39036 5.39462 5.39990 5.47113 5.50132 5.61271 5.69691 5.72490 5.76459 5.77147 5.84515 5.89005 5.94288 6.03800 6.09805 6.17459 6.23034 6.24392 6.31798 6.35749 6.39062 6.71501 6.75396 6.81008 6.87063 6.92636 7.17267 7.42500 7.45051 7.72750 7.88484 8.04852 8.48309 9.09212 9.65812 11.15510 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.001970 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.776390 B =14209.393200 C =14298.454472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.090 3.910 15 H 0.088 0.912 16 C -0.157 4.157 17 C -0.111 4.111 18 C 0.053 3.947 19 N -0.531 5.531 20 C 0.094 3.906 21 C -0.074 4.074 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.115 4.115 27 C 0.067 3.933 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.034 0.966 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -26.241 15.083 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.069 4.069 4 C -0.143 4.143 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.020 4.020 15 H 0.107 0.893 16 C -0.196 4.196 17 C -0.150 4.150 18 C -0.075 4.075 19 N -0.256 5.256 20 C -0.033 4.033 21 C -0.075 4.075 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.060 4.060 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.052 0.948 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.957 -26.199 14.682 30.047 hybrid contribution -1.361 0.878 -0.062 1.621 sum -2.318 -25.321 14.621 29.331 Atomic orbital electron populations 1.22489 0.88383 1.01220 1.01034 1.62195 1.07523 1.15297 1.40805 1.22284 0.99505 0.86123 0.99005 1.21658 0.99965 0.98154 0.94488 1.19067 0.96232 0.89364 0.96885 1.21219 1.34759 0.97580 1.02070 0.92762 1.25030 0.95284 0.97525 0.96719 1.69956 1.38355 1.11310 1.33991 0.86660 0.78708 0.78477 0.84158 1.20311 1.21337 1.20234 1.21676 1.00220 0.92099 0.87969 0.89343 1.22311 1.00912 1.00220 0.96161 1.21503 1.02007 0.93705 0.97741 1.22186 0.96227 0.96564 0.92523 1.61819 1.59041 1.02079 1.02653 1.21017 0.97461 0.87259 0.97569 1.19754 0.94788 0.97756 0.95158 1.21061 0.93821 0.97234 0.99485 1.21173 0.99901 0.98962 0.93882 1.21146 0.95203 1.00342 0.97426 1.21101 0.95013 0.98866 0.99080 1.21059 0.99863 0.98962 0.93505 1.22087 0.97534 0.93355 0.93073 0.95548 0.90709 0.92259 0.95247 0.91301 0.92645 0.93505 0.96902 0.96626 0.93019 0.91415 0.91863 0.91055 0.91745 0.95287 0.90418 0.94083 0.89681 0.85849 0.86109 0.86305 0.86265 0.86480 0.94799 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.58 60.06 0.52 0.75 16 2 N -0.54 -8.03 4.71 -234.80 -1.11 -9.13 16 3 C 0.06 1.02 4.53 -3.82 -0.02 1.01 16 4 C -0.10 -2.21 5.08 -26.73 -0.14 -2.35 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.09 1.15 2.36 -67.63 -0.16 0.99 16 15 H 0.09 1.24 7.94 -51.93 -0.41 0.83 16 16 C -0.16 -1.86 4.56 -26.61 -0.12 -1.99 16 17 C -0.11 -1.14 6.10 -26.64 -0.16 -1.31 16 18 C 0.05 0.51 5.16 -3.83 -0.02 0.49 16 19 N -0.53 -5.43 4.65 -236.11 -1.10 -6.53 16 20 C 0.09 0.83 5.12 -4.98 -0.03 0.80 16 21 C -0.07 -0.65 4.89 -104.62 -0.51 -1.16 16 22 C -0.10 -0.84 9.70 -39.58 -0.38 -1.23 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 25 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 26 C -0.12 -0.94 7.88 -39.59 -0.31 -1.25 16 27 C 0.07 0.75 4.68 -3.84 -0.02 0.73 16 28 H 0.03 0.35 6.16 -51.93 -0.32 0.03 16 29 H 0.07 1.10 6.30 -51.93 -0.33 0.78 16 30 H 0.06 0.71 6.45 -51.93 -0.33 0.37 16 31 H 0.03 0.53 7.12 -51.93 -0.37 0.16 16 32 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.97 6.47 -51.93 -0.34 0.64 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.89 7.03 -51.93 -0.37 0.52 16 39 H 0.06 0.75 6.20 -51.93 -0.32 0.43 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.73 5.75 -51.93 -0.30 0.43 16 44 H 0.04 0.34 8.07 -51.93 -0.42 -0.08 16 45 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 50 H 0.12 0.82 7.95 -52.48 -0.42 0.40 16 51 H 0.03 0.38 6.51 -51.93 -0.34 0.04 16 52 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -30.54 394.78 -12.90 -43.44 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -9.27 Total: -2.30 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -3.09 Total: -21.79 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -1.47 Total: -42.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.54 -12.90 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174949624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.825 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds