Wall clock time and date at job start Tue Mar 31 2020 10:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00177 * 2 1 4 4 C 1.52999 * 109.47117 * 293.95926 * 3 2 1 5 5 C 1.53004 * 109.47158 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47279 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00190 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00106 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47032 * 59.99957 * 10 8 6 12 12 H 1.48499 * 109.47303 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47222 * 300.00227 * 10 8 6 14 14 C 1.46895 * 111.00449 * 123.95864 * 2 1 3 15 15 H 1.09001 * 109.54009 * 185.94800 * 14 2 1 16 16 C 1.53123 * 109.50104 * 306.04293 * 14 2 1 17 17 C 1.53120 * 109.21163 * 177.56299 * 16 14 2 18 18 C 1.53048 * 109.27450 * 302.43753 * 17 16 14 19 19 N 1.46848 * 109.57298 * 59.08726 * 18 17 16 20 20 C 1.46892 * 110.99938 * 174.18963 * 19 18 17 21 21 C 1.50706 * 109.47366 * 294.20995 * 20 19 18 22 22 C 1.38236 * 119.99898 * 269.72675 * 21 20 19 23 23 C 1.38241 * 119.99717 * 179.76066 * 22 21 20 24 24 C 1.38231 * 119.99709 * 0.51346 * 23 22 21 25 25 C 1.38229 * 120.00306 * 359.74002 * 24 23 22 26 26 C 1.38227 * 120.00138 * 0.02562 * 25 24 23 27 27 C 1.46842 * 111.19688 * 298.28804 * 19 18 17 28 28 H 1.09005 * 109.46720 * 296.04561 * 1 2 3 29 29 H 1.08997 * 109.47499 * 56.03968 * 1 2 3 30 30 H 1.08994 * 109.47197 * 176.04543 * 1 2 3 31 31 H 1.08998 * 109.46894 * 53.95480 * 3 2 1 32 32 H 1.08996 * 109.47145 * 173.95646 * 3 2 1 33 33 H 1.09005 * 109.47249 * 299.99543 * 4 3 2 34 34 H 1.08996 * 109.47342 * 59.99840 * 4 3 2 35 35 H 1.09005 * 109.46536 * 299.99818 * 5 4 3 36 36 H 1.08996 * 109.47257 * 59.99627 * 5 4 3 37 37 H 0.97002 * 120.00291 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.52319 * 297.50093 * 16 14 2 39 39 H 1.08995 * 109.52318 * 57.62774 * 16 14 2 40 40 H 1.09000 * 109.50719 * 62.32149 * 17 16 14 41 41 H 1.09003 * 109.50116 * 182.43702 * 17 16 14 42 42 H 1.08999 * 109.41208 * 299.06816 * 18 17 16 43 43 H 1.08998 * 109.44995 * 179.12696 * 18 17 16 44 44 H 1.08998 * 109.47248 * 54.20814 * 20 19 18 45 45 H 1.09002 * 109.47520 * 174.21343 * 20 19 18 46 46 H 1.07997 * 120.00389 * 0.02562 * 22 21 20 47 47 H 1.07994 * 119.99628 * 180.23075 * 23 22 21 48 48 H 1.08001 * 119.99786 * 179.72389 * 24 23 22 49 49 H 1.08007 * 119.99905 * 179.97438 * 25 24 23 50 50 H 1.08007 * 120.00519 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.46203 * 301.72398 * 27 19 18 52 52 H 1.09006 * 109.45199 * 181.75359 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1803 3.4857 -1.3185 6 6 1.8222 4.1612 -2.6171 7 1 1.2598 3.6253 -3.3675 8 6 2.2126 5.4633 -2.8474 9 7 2.8970 6.1160 -1.9335 10 14 1.7694 6.3005 -4.4574 11 1 0.2923 6.3372 -4.6060 12 1 2.3020 7.6866 -4.4576 13 1 2.3620 5.5428 -5.5888 14 6 1.9955 -0.7660 1.1374 15 1 3.0800 -0.6633 1.1754 16 6 1.3859 -0.2346 2.4377 17 6 1.8919 -1.0764 3.6124 18 6 1.5282 -2.5441 3.3757 19 7 2.1355 -3.0053 2.1207 20 6 1.9221 -4.4462 1.9310 21 6 2.6658 -5.2089 2.9970 22 6 3.9691 -5.6131 2.7756 23 6 4.6530 -6.3084 3.7553 24 6 4.0300 -6.6086 4.9522 25 6 2.7251 -6.2090 5.1715 26 6 2.0428 -5.5095 4.1938 27 6 1.6275 -2.2424 0.9734 28 1 -0.3633 0.4513 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.0657 1.5016 -2.1492 34 1 0.5471 2.0845 -1.4264 35 1 1.7463 4.0418 -0.4874 36 1 3.2645 3.4582 -1.2105 37 1 3.1721 7.0320 -2.0957 38 1 1.6814 0.8048 2.5804 39 1 0.2992 -0.3002 2.3840 40 1 2.9747 -0.9787 3.6904 41 1 1.4272 -0.7296 4.5354 42 1 0.4445 -2.6432 3.3128 43 1 1.9007 -3.1483 4.2030 44 1 0.8573 -4.6682 2.0015 45 1 2.2906 -4.7419 0.9487 46 1 4.4545 -5.3820 1.8389 47 1 5.6724 -6.6209 3.5838 48 1 4.5628 -7.1557 5.7159 49 1 2.2382 -6.4440 6.1066 50 1 1.0230 -5.1976 4.3650 51 1 0.5434 -2.3430 0.9217 52 1 2.0722 -2.6277 0.0558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174949624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:36 Heat of formation + Delta-G solvation = 3.678381 kcal Electronic energy + Delta-G solvation = -26193.607279 eV Core-core repulsion = 22770.398822 eV Total energy + Delta-G solvation = -3423.208457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99110 -39.92978 -37.96716 -35.78625 -34.43905 -33.18618 -32.02862 -31.74496 -30.36887 -28.70449 -27.28809 -26.85766 -24.63718 -24.01952 -23.43096 -22.67550 -21.74110 -21.38761 -20.24226 -18.46751 -17.64518 -17.28289 -16.72558 -16.47546 -16.34047 -16.16891 -16.05814 -15.56574 -15.27010 -15.10064 -14.78170 -14.71782 -14.25972 -14.24059 -14.03659 -13.78299 -13.57445 -13.36927 -13.26696 -13.12365 -12.72936 -12.71415 -12.56417 -12.45838 -12.25702 -12.15795 -11.95409 -11.80372 -11.69512 -11.67280 -11.49574 -11.34367 -11.28173 -11.00264 -10.54072 -9.75268 -9.67126 -9.28631 -9.12191 -8.19466 -6.30607 0.46041 0.55862 1.39809 1.43316 1.51210 2.40985 2.60815 3.00428 3.13259 3.33309 3.79958 3.80500 3.85671 3.99118 4.01730 4.12396 4.20894 4.24275 4.29536 4.35170 4.37825 4.41517 4.49609 4.55454 4.60265 4.63991 4.68665 4.70391 4.74773 4.76850 4.83309 4.87510 4.96747 5.00263 5.03322 5.10021 5.10918 5.16080 5.21415 5.22768 5.27668 5.35857 5.52763 5.60910 5.67843 5.74889 5.75050 5.86366 6.03118 6.06504 6.15090 6.18024 6.25909 6.29252 6.85922 7.38346 8.92226 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.001970 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.776390 B =14209.393200 C =14298.454472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.072 3.928 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.091 3.909 15 H 0.073 0.927 16 C -0.151 4.151 17 C -0.107 4.107 18 C 0.057 3.943 19 N -0.540 5.540 20 C 0.097 3.903 21 C -0.086 4.086 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.123 4.123 27 C 0.077 3.923 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.011 1.011 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.127 0.873 51 H 0.040 0.960 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 -27.724 15.248 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.056 4.056 4 C -0.127 4.127 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.017 4.017 15 H 0.091 0.909 16 C -0.191 4.191 17 C -0.145 4.145 18 C -0.070 4.070 19 N -0.265 5.265 20 C -0.030 4.030 21 C -0.086 4.086 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.051 4.051 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.142 0.858 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.156 0.844 50 H 0.145 0.855 51 H 0.058 0.942 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.991 -27.709 14.853 31.502 hybrid contribution -1.002 1.297 -0.049 1.639 sum -2.992 -26.413 14.804 30.426 Atomic orbital electron populations 1.22513 0.87266 1.02485 1.00689 1.62123 1.08533 1.13379 1.42276 1.21965 0.99164 0.87698 0.96790 1.21398 0.99793 0.95188 0.96279 1.18965 0.94585 0.92234 0.95354 1.21658 1.35032 0.98334 1.03039 0.92257 1.26010 0.94971 0.98313 1.00720 1.70094 1.39288 1.11760 1.36230 0.85486 0.78917 0.77279 0.79280 1.19122 1.20769 1.19187 1.21660 0.99312 0.93091 0.87679 0.90870 1.22236 1.01012 0.99501 0.96307 1.21478 1.01428 0.94061 0.97574 1.22153 0.96547 0.95908 0.92421 1.61788 1.59327 1.02901 1.02456 1.21011 0.97929 0.86175 0.97839 1.19816 0.94979 0.98288 0.95562 1.21214 0.94147 0.97880 0.99950 1.21420 1.00668 0.98802 0.93966 1.21452 0.95432 1.00156 0.97699 1.21397 0.95168 0.98392 0.99705 1.21234 1.00419 0.99068 0.93390 1.21924 0.97750 0.91970 0.93450 0.95135 0.91903 0.90027 0.95648 0.92006 0.93060 0.93006 0.99239 0.99158 0.92782 0.93073 0.91423 0.92024 0.90355 0.94630 0.89863 0.93360 0.89511 0.85826 0.84753 0.84426 0.84411 0.85502 0.94224 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.58 127.69 1.10 1.57 16 2 N -0.54 -15.96 4.71 -896.77 -4.23 -20.18 16 3 C 0.07 2.58 4.53 86.30 0.39 2.97 16 4 C -0.09 -3.81 5.08 30.60 0.16 -3.66 16 5 C 0.03 1.43 4.97 29.85 0.15 1.58 16 6 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 10 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 C 0.09 2.30 2.36 44.97 0.11 2.41 16 15 H 0.07 2.08 7.94 -2.39 -0.02 2.06 16 16 C -0.15 -3.49 4.56 30.68 0.14 -3.35 16 17 C -0.11 -2.07 6.10 30.65 0.19 -1.88 16 18 C 0.06 1.00 5.16 86.33 0.45 1.45 16 19 N -0.54 -10.32 4.65 -900.92 -4.19 -14.51 16 20 C 0.10 1.57 5.12 85.56 0.44 2.01 16 21 C -0.09 -1.41 4.89 -19.86 -0.10 -1.51 16 22 C -0.11 -1.88 9.70 22.27 0.22 -1.66 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 24 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 25 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 26 C -0.12 -1.78 7.88 22.27 0.18 -1.61 16 27 C 0.08 1.62 4.68 86.33 0.40 2.02 16 28 H 0.03 0.77 6.16 -2.38 -0.01 0.76 16 29 H 0.06 1.79 6.30 -2.39 -0.02 1.78 16 30 H 0.08 1.77 6.45 -2.39 -0.02 1.75 16 31 H 0.03 0.93 7.12 -2.39 -0.02 0.91 16 32 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.05 2.16 6.47 -2.39 -0.02 2.15 16 35 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.05 1.34 7.03 -2.39 -0.02 1.33 16 39 H 0.07 1.50 6.20 -2.39 -0.01 1.49 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 1.40 5.75 -2.39 -0.01 1.39 16 44 H 0.05 0.71 8.07 -2.39 -0.02 0.69 16 45 H 0.09 1.35 7.93 -2.39 -0.02 1.33 16 46 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 50 H 0.13 1.52 7.95 -2.91 -0.02 1.49 16 51 H 0.04 0.79 6.51 -2.39 -0.02 0.78 16 52 H 0.08 1.73 8.02 -2.38 -0.02 1.71 16 Total: -1.00 -65.62 394.78 -0.07 -65.69 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.86 Total: 15.02 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 5.17 Total: -35.46 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -8.13 Total: -92.33 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.62 -0.07 -65.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174949624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.370 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds