Wall clock time and date at job start Tue Mar 31 2020 12:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99978 * 2 1 4 4 H 1.48501 * 109.47243 * 270.00253 * 3 2 1 5 5 H 1.48500 * 109.46885 * 30.00210 * 3 2 1 6 6 H 1.48503 * 109.46914 * 150.00159 * 3 2 1 7 7 C 1.38799 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00037 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.81009 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46965 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 S 1.81399 * 109.47004 * 179.97438 * 12 11 10 14 14 C 1.76192 * 103.00037 * 179.97438 * 13 12 11 15 15 C 1.38892 * 120.08774 * 359.72474 * 14 13 12 16 16 C 1.38132 * 119.94301 * 179.74300 * 15 14 13 17 17 C 1.38288 * 120.11875 * 0.51102 * 16 15 14 18 18 N 1.48007 * 119.91073 * 179.74519 * 17 16 15 19 19 O 1.21807 * 119.99411 * 180.02562 * 18 17 16 20 20 O 1.21793 * 120.00606 * 0.02562 * 18 17 16 21 21 C 1.38300 * 120.17167 * 359.76660 * 17 16 15 22 22 C 1.38261 * 120.05578 * 359.97438 * 21 17 16 23 23 F 1.35098 * 120.06055 * 179.97438 * 22 21 17 24 24 H 0.97000 * 120.00343 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46885 * 59.99452 * 10 9 7 26 26 H 1.09000 * 109.46781 * 299.99831 * 10 9 7 27 27 H 1.08993 * 109.47839 * 59.99947 * 11 10 9 28 28 H 1.09000 * 109.47160 * 299.99509 * 11 10 9 29 29 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 30 30 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 31 31 H 1.08003 * 120.02369 * 0.02562 * 15 14 13 32 32 H 1.08006 * 119.93475 * 180.25427 * 16 15 14 33 33 H 1.08000 * 119.97598 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5958 -3.2362 0.0010 12 6 5.8614 -4.7430 0.0015 13 16 7.6507 -5.0415 0.0021 14 6 7.7591 -6.8001 0.0033 15 6 6.6025 -7.5691 0.0093 16 6 6.6910 -8.9475 0.0048 17 6 7.9291 -9.5634 0.0050 18 7 8.0186 -11.0408 0.0060 19 8 9.1084 -11.5849 0.0067 20 8 7.0026 -11.7125 0.0060 21 6 9.0840 -8.8025 0.0049 22 6 9.0038 -7.4222 0.0039 23 9 10.1318 -6.6788 0.0043 24 1 -0.4850 0.8400 0.0004 25 1 3.6440 -3.4313 -0.8903 26 1 3.6434 -3.4317 0.8896 27 1 6.0380 -2.7895 0.8914 28 1 6.0394 -2.7890 -0.8885 29 1 5.4179 -5.1899 0.8912 30 1 5.4191 -5.1901 -0.8888 31 1 5.6348 -7.0895 0.0128 32 1 5.7915 -9.5454 0.0053 33 1 10.0493 -9.2868 0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185153770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:23 Heat of formation + Delta-G solvation = -35.527148 kcal Electronic energy + Delta-G solvation = -19913.436510 eV Core-core repulsion = 16302.213451 eV Total energy + Delta-G solvation = -3611.223059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.63696 -42.56443 -39.66542 -36.95099 -34.87487 -32.78591 -32.55820 -31.60502 -27.71178 -27.19574 -25.76656 -23.88928 -23.23842 -21.82786 -20.01046 -19.12998 -18.38888 -17.93523 -17.65766 -17.21217 -16.98877 -16.42622 -15.70004 -15.69498 -15.10071 -15.06805 -14.55262 -14.04965 -13.62220 -13.55438 -13.03767 -12.99670 -12.72391 -12.52088 -11.95872 -11.95062 -11.56736 -11.51101 -11.31793 -11.22913 -11.05127 -10.83602 -10.80423 -10.38020 -9.93194 -9.89830 -9.12508 -8.74297 -8.17740 -7.10746 -6.39889 -4.14554 -0.80581 0.14213 0.62913 0.72124 0.93811 1.71006 2.41970 2.84921 3.21075 3.23442 3.35312 3.42963 3.64015 3.91770 4.08593 4.20218 4.43541 4.52876 4.54747 4.63066 4.74030 4.94084 4.98924 4.99005 5.04043 5.10753 5.35701 5.43922 5.55788 5.83785 5.94353 6.07663 6.30316 7.22919 7.83416 8.31718 9.05316 10.69358 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.002194 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.902779 B =12759.939609 C =13710.092848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.093 3.907 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.238 1.238 7 C -0.506 4.506 8 H 0.089 0.911 9 S -0.207 6.207 10 C -0.081 4.081 11 C -0.088 4.088 12 C -0.116 4.116 13 S -0.041 6.041 14 C -0.077 4.077 15 C -0.113 4.113 16 C -0.036 4.036 17 C -0.037 4.037 18 N 0.032 4.968 19 O -0.159 6.159 20 O -0.154 6.154 21 C -0.070 4.070 22 C 0.114 3.886 23 F -0.111 7.111 24 H 0.272 0.728 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.169 -16.472 0.095 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.654 4.654 8 H 0.107 0.893 9 S 0.020 5.980 10 C -0.231 4.231 11 C -0.128 4.128 12 C -0.266 4.266 13 S 0.211 5.789 14 C -0.193 4.193 15 C -0.138 4.138 16 C -0.058 4.058 17 C -0.124 4.124 18 N 0.551 4.449 19 O -0.374 6.374 20 O -0.370 6.370 21 C -0.092 4.092 22 C 0.086 3.914 23 F -0.090 7.090 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.178 0.822 32 H 0.181 0.819 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 18.556 -13.713 0.098 23.073 hybrid contribution -1.542 -1.474 -0.034 2.134 sum 17.013 -15.187 0.064 22.806 Atomic orbital electron populations 1.69925 1.05917 1.27882 1.47771 1.24794 0.94528 0.99059 0.93219 0.86682 0.81714 0.83227 0.79794 1.19278 1.19956 1.16180 1.22080 0.86794 0.97490 1.58996 0.89301 1.84240 1.12036 1.04128 1.97564 1.23030 0.95606 1.00295 1.04187 1.21118 0.96739 0.90395 1.04517 1.24104 0.92761 1.03106 1.06617 1.86172 1.11034 0.94156 1.87585 1.22609 0.95079 1.01160 1.00405 1.21161 0.98079 0.92461 1.02141 1.21027 0.96756 0.94881 0.93086 1.20675 0.95922 0.79930 1.15850 1.43442 1.00608 1.03143 0.97660 1.94561 1.15583 1.73865 1.53420 1.94563 1.25977 1.63282 1.53223 1.20747 0.99852 0.91661 0.96936 1.16532 0.81525 0.87723 1.05580 1.91612 1.48054 1.75692 1.93595 0.91823 0.90989 0.90956 0.90037 0.90045 0.88350 0.88356 0.82227 0.81853 0.81331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.97 55.49 0.78 -24.95 16 2 C 0.09 2.60 5.50 -17.43 -0.10 2.51 16 3 Si 0.86 20.64 27.74 -169.99 -4.72 15.92 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.24 -5.55 6.74 56.52 0.38 -5.17 16 7 C -0.51 -13.89 10.04 30.94 0.31 -13.58 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.21 -4.66 19.41 -107.50 -2.09 -6.74 16 10 C -0.08 -1.33 5.67 37.16 0.21 -1.12 16 11 C -0.09 -1.07 5.22 -26.73 -0.14 -1.21 16 12 C -0.12 -1.02 4.33 37.16 0.16 -0.86 16 13 S -0.04 -0.38 21.53 -107.50 -2.31 -2.70 16 14 C -0.08 -0.64 6.11 -39.00 -0.24 -0.87 16 15 C -0.11 -0.76 9.36 -39.38 -0.37 -1.13 16 16 C -0.04 -0.25 9.55 -39.60 -0.38 -0.63 16 17 C -0.04 -0.31 6.85 -79.91 -0.55 -0.86 16 18 N 0.03 0.33 4.45 33.98 0.15 0.49 16 19 O -0.16 -1.79 18.44 -29.46 -0.54 -2.33 16 20 O -0.15 -1.72 18.44 -29.46 -0.54 -2.26 16 21 C -0.07 -0.55 9.52 -39.55 -0.38 -0.92 16 22 C 0.11 0.97 7.28 -39.24 -0.29 0.68 16 23 F -0.11 -1.05 16.76 2.25 0.04 -1.01 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 26 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 0.75 7.74 -51.92 -0.40 0.35 16 30 H 0.10 0.75 7.76 -51.92 -0.40 0.34 16 31 H 0.16 0.80 5.88 -52.48 -0.31 0.49 16 32 H 0.16 0.86 7.60 -52.48 -0.40 0.46 16 33 H 0.17 1.07 7.60 -52.49 -0.40 0.68 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -30.33 326.63 -9.24 -39.58 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -3.18 Total: -2.92 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.75 Total: -17.99 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.93 Total: -24.46 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -1.09 Total: -4.59 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.72 Total: 15.92 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -4.40 Total: -9.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.33 -9.24 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185153770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.050 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds