Wall clock time and date at job start Tue Mar 31 2020 12:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99978 * 2 1 4 4 H 1.48501 * 109.47243 * 270.00253 * 3 2 1 5 5 H 1.48500 * 109.46885 * 30.00210 * 3 2 1 6 6 H 1.48503 * 109.46914 * 150.00159 * 3 2 1 7 7 C 1.38799 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00037 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.81009 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46965 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 S 1.81399 * 109.47004 * 179.97438 * 12 11 10 14 14 C 1.76192 * 103.00037 * 179.97438 * 13 12 11 15 15 C 1.38892 * 120.08774 * 359.72474 * 14 13 12 16 16 C 1.38132 * 119.94301 * 179.74300 * 15 14 13 17 17 C 1.38288 * 120.11875 * 0.51102 * 16 15 14 18 18 N 1.48007 * 119.91073 * 179.74519 * 17 16 15 19 19 O 1.21807 * 119.99411 * 180.02562 * 18 17 16 20 20 O 1.21793 * 120.00606 * 0.02562 * 18 17 16 21 21 C 1.38300 * 120.17167 * 359.76660 * 17 16 15 22 22 C 1.38261 * 120.05578 * 359.97438 * 21 17 16 23 23 F 1.35098 * 120.06055 * 179.97438 * 22 21 17 24 24 H 0.97000 * 120.00343 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46885 * 59.99452 * 10 9 7 26 26 H 1.09000 * 109.46781 * 299.99831 * 10 9 7 27 27 H 1.08993 * 109.47839 * 59.99947 * 11 10 9 28 28 H 1.09000 * 109.47160 * 299.99509 * 11 10 9 29 29 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 30 30 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 31 31 H 1.08003 * 120.02369 * 0.02562 * 15 14 13 32 32 H 1.08006 * 119.93475 * 180.25427 * 16 15 14 33 33 H 1.08000 * 119.97598 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5958 -3.2362 0.0010 12 6 5.8614 -4.7430 0.0015 13 16 7.6507 -5.0415 0.0021 14 6 7.7591 -6.8001 0.0033 15 6 6.6025 -7.5691 0.0093 16 6 6.6910 -8.9475 0.0048 17 6 7.9291 -9.5634 0.0050 18 7 8.0186 -11.0408 0.0060 19 8 9.1084 -11.5849 0.0067 20 8 7.0026 -11.7125 0.0060 21 6 9.0840 -8.8025 0.0049 22 6 9.0038 -7.4222 0.0039 23 9 10.1318 -6.6788 0.0043 24 1 -0.4850 0.8400 0.0004 25 1 3.6440 -3.4313 -0.8903 26 1 3.6434 -3.4317 0.8896 27 1 6.0380 -2.7895 0.8914 28 1 6.0394 -2.7890 -0.8885 29 1 5.4179 -5.1899 0.8912 30 1 5.4191 -5.1901 -0.8888 31 1 5.6348 -7.0895 0.0128 32 1 5.7915 -9.5454 0.0053 33 1 10.0493 -9.2868 0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185153770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:19 Heat of formation + Delta-G solvation = -50.435765 kcal Electronic energy + Delta-G solvation = -19914.082996 eV Core-core repulsion = 16302.213451 eV Total energy + Delta-G solvation = -3611.869545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -50.30963 -43.32665 -40.28673 -37.75311 -35.87371 -34.68357 -33.43470 -32.21064 -28.74649 -28.02326 -27.78211 -24.54716 -23.94632 -22.82625 -20.71769 -19.89839 -19.65479 -19.05163 -18.69561 -17.88205 -17.62684 -17.12163 -17.10513 -16.62186 -16.61166 -15.93730 -15.55755 -14.98158 -14.77030 -14.39650 -14.30231 -13.93006 -13.86400 -13.48952 -13.22105 -13.04579 -12.82297 -12.77093 -12.36067 -12.35397 -12.12885 -12.09522 -11.75752 -11.56040 -11.44803 -11.16837 -10.57240 -10.48166 -8.99982 -8.85610 -8.52169 -6.23386 -1.51766 -0.43424 -0.07757 -0.01903 0.23101 1.01002 1.15287 1.31955 1.47144 1.75543 1.81601 2.23763 2.61557 2.67517 2.86381 3.07223 3.33661 3.49675 3.78413 3.78545 3.88423 4.05315 4.07219 4.27714 4.38501 4.42000 4.51382 4.55981 4.70299 4.92062 4.95056 5.14156 5.21265 5.69534 6.10846 6.38958 6.92428 8.60469 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.002194 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.902779 B =12759.939609 C =13710.092848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.923 3.077 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.228 1.228 7 C -0.519 4.519 8 H 0.055 0.945 9 S -0.223 6.223 10 C -0.067 4.067 11 C -0.079 4.079 12 C -0.109 4.109 13 S -0.056 6.056 14 C -0.077 4.077 15 C -0.105 4.105 16 C -0.027 4.027 17 C -0.046 4.046 18 N 0.034 4.966 19 O -0.180 6.180 20 O -0.165 6.165 21 C -0.065 4.065 22 C 0.103 3.897 23 F -0.120 7.120 24 H 0.276 0.724 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.242 -16.581 0.124 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.151 1.151 7 C -0.667 4.667 8 H 0.073 0.927 9 S 0.005 5.995 10 C -0.217 4.217 11 C -0.119 4.119 12 C -0.258 4.258 13 S 0.195 5.805 14 C -0.192 4.192 15 C -0.130 4.130 16 C -0.048 4.048 17 C -0.133 4.133 18 N 0.549 4.451 19 O -0.392 6.392 20 O -0.381 6.381 21 C -0.087 4.087 22 C 0.077 3.923 23 F -0.098 7.098 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.200 0.800 32 H 0.200 0.800 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 19.654 -13.851 0.128 24.045 hybrid contribution -1.870 -1.568 -0.048 2.441 sum 17.784 -15.419 0.080 23.538 Atomic orbital electron populations 1.70030 1.07632 1.29064 1.49259 1.25760 0.95378 1.02738 0.92916 0.85749 0.80820 0.78873 0.80134 1.18744 1.19103 1.15103 1.22325 0.89976 0.96268 1.58111 0.92671 1.83971 1.07640 1.10310 1.97606 1.23082 0.98822 0.95198 1.04579 1.20946 0.93280 0.93126 1.04545 1.23974 0.92821 1.00530 1.08498 1.86276 1.11116 0.95178 1.87928 1.22643 0.95497 1.00563 1.00535 1.21405 0.98425 0.92143 1.01001 1.21285 0.96783 0.95125 0.91627 1.20780 0.96880 0.78563 1.17068 1.43692 1.00269 1.03972 0.97133 1.94556 1.15761 1.74578 1.54331 1.94548 1.25967 1.64054 1.53490 1.20811 1.00266 0.91420 0.96218 1.16603 0.81478 0.87848 1.06415 1.91592 1.48543 1.75872 1.93781 0.91466 0.90605 0.90573 0.90114 0.90102 0.86548 0.86564 0.79982 0.80012 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 13.97 21.65 0.30 -54.61 16 2 C 0.04 2.08 5.50 84.86 0.47 2.55 16 3 Si 0.92 42.34 27.74 68.60 1.90 44.24 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.23 -9.98 6.74 99.48 0.67 -9.31 16 7 C -0.52 -28.79 10.04 67.95 0.68 -28.10 16 8 H 0.06 3.31 8.03 -2.91 -0.02 3.29 16 9 S -0.22 -9.77 19.41 -56.49 -1.10 -10.86 16 10 C -0.07 -2.05 5.67 71.98 0.41 -1.64 16 11 C -0.08 -1.71 5.22 30.60 0.16 -1.55 16 12 C -0.11 -1.53 4.33 71.98 0.31 -1.21 16 13 S -0.06 -0.89 21.53 -56.49 -1.22 -2.11 16 14 C -0.08 -1.07 6.11 22.64 0.14 -0.93 16 15 C -0.10 -1.05 9.36 22.40 0.21 -0.84 16 16 C -0.03 -0.29 9.55 22.26 0.21 -0.08 16 17 C -0.05 -0.69 6.85 36.40 0.25 -0.44 16 18 N 0.03 0.67 4.45 -46.41 -0.21 0.46 16 19 O -0.18 -3.98 18.44 18.88 0.35 -3.63 16 20 O -0.16 -3.50 18.44 18.89 0.35 -3.16 16 21 C -0.07 -0.92 9.52 22.29 0.21 -0.71 16 22 C 0.10 1.58 7.28 22.49 0.16 1.75 16 23 F -0.12 -2.11 16.76 44.97 0.75 -1.36 16 24 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.08 2.30 8.14 -2.40 -0.02 2.28 16 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.12 1.27 7.74 -2.39 -0.02 1.25 16 30 H 0.12 1.27 7.76 -2.39 -0.02 1.25 16 31 H 0.18 1.00 5.88 -2.91 -0.02 0.99 16 32 H 0.18 1.33 7.60 -2.91 -0.02 1.31 16 33 H 0.18 2.09 7.60 -2.91 -0.02 2.07 16 Total: -1.00 -66.35 326.63 5.47 -60.88 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.11 Total: 1.37 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.22 Total: -31.22 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.10 Total: -54.15 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.70 Total: -6.79 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.75 Total: -1.36 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.90 Total: 44.24 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -2.31 Total: -12.97 kcal Total: -66.35 5.47 -60.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185153770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.446 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds