Wall clock time and date at job start Tue Mar 31 2020 11:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32855 * 123.47071 * 2 1 4 4 Br 1.89099 * 124.71878 * 359.97438 * 3 2 1 5 5 S 1.75503 * 110.56515 * 180.02562 * 3 2 1 6 6 C 1.70445 * 92.45259 * 359.97438 * 5 3 2 7 7 C 1.35980 * 110.83670 * 0.23219 * 6 5 3 8 8 C 1.47180 * 123.45747 * 179.73315 * 7 6 5 9 9 O 1.21637 * 120.00202 * 180.02562 * 8 7 6 10 10 N 1.34783 * 120.00129 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00276 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47277 * 34.99386 * 11 10 8 13 13 C 1.52998 * 109.46537 * 274.99654 * 11 10 8 14 14 C 1.50695 * 109.47284 * 154.99865 * 11 10 8 15 15 H 1.08001 * 120.00144 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99755 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00367 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99582 * 179.97438 * 16 14 11 19 19 H 1.48508 * 109.46753 * 90.00316 * 18 16 14 20 20 H 1.48496 * 109.47229 * 209.99704 * 18 16 14 21 21 H 1.48496 * 109.47442 * 330.00185 * 18 16 14 22 22 H 1.08997 * 109.46586 * 90.02801 * 1 2 3 23 23 H 1.08996 * 109.46876 * 210.02678 * 1 2 3 24 24 H 1.09001 * 109.46974 * 330.02898 * 1 2 3 25 25 H 1.08002 * 124.57830 * 179.97438 * 6 5 3 26 26 H 0.96996 * 119.99513 * 359.97438 * 10 8 7 27 27 H 1.09000 * 109.47717 * 60.00238 * 13 11 10 28 28 H 1.09005 * 109.46864 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.47119 * 299.99829 * 13 11 10 30 30 H 0.97003 * 120.00508 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2398 1.1082 0.0000 4 35 1.5372 2.8639 -0.0007 5 16 3.9505 0.7163 -0.0007 6 6 3.6412 -0.9599 -0.0003 7 6 2.3037 -1.2050 -0.0047 8 6 1.7269 -2.5590 -0.0112 9 8 0.5194 -2.7058 -0.0155 10 7 2.5367 -3.6365 -0.0125 11 6 1.9626 -4.9843 -0.0195 12 1 1.0477 -4.9865 -0.6120 13 6 1.6422 -5.4095 1.4149 14 6 2.9524 -5.9488 -0.6202 15 1 3.9129 -5.5934 -0.9629 16 6 2.6317 -7.2851 -0.7323 17 7 1.4624 -7.7181 -0.3145 18 14 3.8585 -8.4806 -1.4776 19 1 4.7245 -9.0337 -0.4054 20 1 3.1279 -9.5882 -2.1443 21 1 4.6984 -7.7704 -2.4752 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8903 0.5134 25 1 4.4045 -1.7240 -0.0009 26 1 3.4995 -3.5195 -0.0095 27 1 0.9263 -4.7119 1.8494 28 1 1.2155 -6.4126 1.4097 29 1 2.5571 -5.4074 2.0074 30 1 1.2369 -8.6583 -0.3930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185260929.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:46 Heat of formation + Delta-G solvation = -14.517101 kcal Electronic energy + Delta-G solvation = -16260.750627 eV Core-core repulsion = 13421.594450 eV Total energy + Delta-G solvation = -2839.156177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.49026 -37.12536 -34.82052 -32.81404 -31.96690 -30.33274 -28.82873 -26.90811 -25.30038 -24.21980 -21.43811 -19.69446 -18.78841 -17.90410 -16.92101 -15.88954 -15.17415 -14.67262 -14.35260 -14.02335 -13.51590 -13.45247 -12.98800 -12.62382 -12.43078 -12.18402 -11.83867 -11.75163 -11.16483 -11.12449 -11.05867 -10.94166 -10.74654 -10.38161 -10.34974 -10.26915 -9.12458 -9.08055 -8.78327 -8.59878 -8.42413 -7.94770 -6.15886 -4.25553 0.62130 0.94413 1.62220 1.78118 1.94653 3.21939 3.29065 3.30988 3.87098 4.03239 4.35308 4.69572 5.16598 5.19250 5.28829 5.51826 5.61363 5.85213 5.94050 6.13417 6.55999 6.79509 6.93354 7.10588 7.39263 7.51043 7.64931 7.87114 8.10683 8.58285 8.72882 9.03053 9.41956 10.90077 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.036505 B = 0.003250 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.829759 B = 8613.104411 C = 9127.125289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.002 4.002 3 C -0.243 4.243 4 Br 0.005 6.995 5 S 0.216 5.784 6 C -0.201 4.201 7 C -0.138 4.138 8 C 0.562 3.438 9 O -0.543 6.543 10 N -0.699 5.699 11 C 0.265 3.735 12 H 0.051 0.949 13 C -0.147 4.147 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.882 5.882 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.274 1.274 22 H 0.079 0.921 23 H 0.101 0.899 24 H 0.066 0.934 25 H 0.178 0.822 26 H 0.387 0.613 27 H 0.016 0.984 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 20.678 1.407 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.017 4.017 3 C -0.438 4.438 4 Br 0.088 6.912 5 S 0.482 5.518 6 C -0.340 4.340 7 C -0.157 4.157 8 C 0.345 3.655 9 O -0.423 6.423 10 N -0.346 5.346 11 C 0.164 3.836 12 H 0.069 0.931 13 C -0.206 4.206 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.520 5.520 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.199 1.199 22 H 0.097 0.903 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.195 0.805 26 H 0.219 0.781 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.978 21.877 1.413 22.280 hybrid contribution 0.179 -1.976 -0.384 2.021 sum 4.157 19.901 1.030 20.356 Atomic orbital electron populations 1.20829 0.87919 1.04359 1.03590 1.19930 0.98098 0.88984 0.94695 1.25686 0.99806 0.95326 1.22970 1.96637 1.85021 1.11474 1.98062 1.82895 1.01575 0.96825 1.70542 1.25837 1.00199 1.02446 1.05534 1.20425 0.91745 0.95221 1.08301 1.17463 0.86857 0.83215 0.77946 1.90706 1.13994 1.86244 1.51342 1.46445 1.09069 1.07541 1.71586 1.18798 0.95265 0.75432 0.94153 0.93084 1.22084 0.98366 1.02902 0.97225 1.21192 1.01799 0.92702 1.41717 0.92105 1.24877 0.95496 0.98122 0.95120 1.69894 1.20568 1.15673 1.45819 0.86442 0.80845 0.80515 0.79260 1.20525 1.21014 1.19850 0.90255 0.88000 0.91493 0.80472 0.78058 0.96529 0.89029 0.95470 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.24 36.01 0.33 -1.23 16 2 C 0.00 -0.04 6.01 -104.03 -0.63 -0.66 16 3 C -0.24 -3.11 6.87 28.88 0.20 -2.91 16 4 Br 0.00 0.05 32.89 -68.01 -2.24 -2.19 16 5 S 0.22 2.34 23.02 -107.50 -2.47 -0.13 16 6 C -0.20 -2.57 10.38 29.92 0.31 -2.26 16 7 C -0.14 -2.23 5.98 -104.63 -0.63 -2.85 16 8 C 0.56 11.34 7.76 -12.63 -0.10 11.25 16 9 O -0.54 -12.63 13.88 5.24 0.07 -12.56 16 10 N -0.70 -14.45 5.04 -56.09 -0.28 -14.73 16 11 C 0.26 6.65 2.56 -69.09 -0.18 6.47 16 12 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 13 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 14 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.54 11.32 55.43 0.63 -23.92 16 18 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.10 1.70 6.05 -51.93 -0.31 1.39 16 24 H 0.07 0.82 7.30 -51.93 -0.38 0.44 16 25 H 0.18 1.89 7.01 -52.49 -0.37 1.52 16 26 H 0.39 6.83 7.03 -40.82 -0.29 6.54 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -29.16 290.59 -8.54 -37.70 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.87 Total: 4.17 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.74 Total: -8.06 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.34 Total: -38.64 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.47 Total: -0.13 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.24 Total: -2.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.16 -8.54 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185260929.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.183 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds