Wall clock time and date at job start Tue Mar 31 2020 11:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33769 * 122.45061 * 2 1 4 4 S 1.70609 * 110.98973 * 179.97438 * 3 2 1 5 5 C 1.75829 * 91.58026 * 359.97438 * 4 3 2 6 6 C 1.46471 * 125.45954 * 179.97438 * 5 4 3 7 7 O 1.21723 * 119.99824 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00309 * 0.30001 * 6 5 4 9 9 C 1.46505 * 120.00095 * 179.72445 * 8 6 5 10 10 H 1.09000 * 109.46989 * 324.99749 * 9 8 6 11 11 C 1.52996 * 109.47130 * 85.00161 * 9 8 6 12 12 C 1.50698 * 109.47013 * 205.00424 * 9 8 6 13 13 H 1.07999 * 120.00181 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00000 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00111 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00054 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46484 * 90.00114 * 16 14 12 18 18 H 1.48501 * 109.47102 * 209.99885 * 16 14 12 19 19 H 1.48495 * 109.47273 * 330.00293 * 16 14 12 20 20 C 1.36755 * 109.07757 * 0.26701 * 5 4 3 21 21 Br 1.89096 * 123.37470 * 179.73644 * 20 5 4 22 22 H 1.09007 * 109.46864 * 89.98228 * 1 2 3 23 23 H 1.08999 * 109.47490 * 209.97585 * 1 2 3 24 24 H 1.08998 * 109.47571 * 329.97689 * 1 2 3 25 25 H 1.07997 * 124.50873 * 359.97436 * 3 2 1 26 26 H 0.97000 * 120.00112 * 359.72880 * 8 6 5 27 27 H 1.09002 * 109.46807 * 60.00065 * 11 9 8 28 28 H 1.08998 * 109.47019 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47099 * 300.00036 * 11 9 8 30 30 H 0.97000 * 120.00320 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1288 0.0000 4 16 3.8968 0.7898 0.0007 5 6 3.5951 -0.9424 0.0018 6 6 4.6247 -1.9842 0.0023 7 8 4.3026 -3.1581 0.0026 8 7 5.9285 -1.6432 0.0080 9 6 6.9582 -2.6854 0.0145 10 1 6.6120 -3.5345 0.6037 11 6 7.2342 -3.1387 -1.4204 12 6 8.2243 -2.1367 0.6203 13 1 8.2587 -1.1139 0.9655 14 6 9.3392 -2.9401 0.7329 15 7 9.2975 -4.1854 0.3122 16 14 10.9089 -2.2597 1.4832 17 1 10.8982 -2.4936 2.9496 18 1 12.0818 -2.9433 0.8814 19 1 10.9942 -0.8017 1.2150 20 6 2.2452 -1.1610 -0.0045 21 35 1.4707 -2.8861 -0.0130 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8897 0.5142 25 1 1.8021 2.1226 -0.0004 26 1 6.1852 -0.7078 0.0078 27 1 7.5804 -2.2895 -2.0095 28 1 8.0006 -3.9137 -1.4155 29 1 6.3184 -3.5356 -1.8585 30 1 10.0819 -4.7505 0.3911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190908248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:21 Heat of formation + Delta-G solvation = -5.980965 kcal Electronic energy + Delta-G solvation = -16260.751308 eV Core-core repulsion = 13421.965286 eV Total energy + Delta-G solvation = -2838.786022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25592 -37.95427 -34.81412 -32.45798 -31.54125 -30.43515 -28.97035 -27.39883 -25.27928 -24.12984 -21.20705 -19.72725 -18.71823 -18.37338 -16.64504 -15.60828 -15.29634 -14.73846 -14.71182 -13.93953 -13.73953 -13.34923 -13.09997 -12.46024 -12.37707 -12.24682 -12.12985 -11.68233 -11.09673 -11.02264 -10.98354 -10.77662 -10.65785 -10.35967 -10.24792 -10.04756 -9.07860 -8.94981 -8.75109 -8.56086 -8.39806 -7.95811 -6.13579 -4.23149 0.45319 1.13898 1.70447 2.16638 2.25942 3.24409 3.30946 3.32678 3.72794 3.91624 4.35246 4.79605 4.91456 5.18938 5.23036 5.30418 5.47338 5.63310 5.68779 6.06688 6.11665 6.81369 6.94739 7.12492 7.37897 7.51262 7.66202 7.88580 8.12239 8.55978 8.73308 8.99240 9.43950 10.92432 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.004409 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.156450 B = 6348.483832 C = 7261.206398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.094 4.094 3 C -0.248 4.248 4 S 0.237 5.763 5 C -0.215 4.215 6 C 0.563 3.437 7 O -0.514 6.514 8 N -0.700 5.700 9 C 0.266 3.734 10 H 0.053 0.947 11 C -0.147 4.147 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.053 4.053 21 Br 0.003 6.997 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.172 0.828 26 H 0.385 0.615 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.016 0.984 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.564 10.386 -1.402 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.387 4.387 4 S 0.505 5.495 5 C -0.339 4.339 6 C 0.346 3.654 7 O -0.392 6.392 8 N -0.348 5.348 9 C 0.165 3.835 10 H 0.070 0.930 11 C -0.206 4.206 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.519 5.519 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.148 4.148 21 Br 0.088 6.912 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.189 0.811 26 H 0.217 0.783 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.035 0.965 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.587 9.622 -1.421 18.372 hybrid contribution -0.140 0.483 0.371 0.625 sum -15.727 10.105 -1.050 18.723 Atomic orbital electron populations 1.20610 0.88978 1.03278 1.02812 1.18462 0.98035 0.90196 1.04084 1.25004 0.99009 1.02956 1.11696 1.83148 1.03022 0.97012 1.66362 1.25071 0.97391 0.98608 1.12839 1.16900 0.82369 0.87214 0.78945 1.90883 1.81153 1.17277 1.49920 1.46489 1.05156 1.11203 1.71978 1.18818 0.84046 0.86393 0.94242 0.92956 1.22084 1.00095 1.01266 0.97167 1.21189 0.95977 0.98695 1.41515 0.92057 1.24873 0.98840 0.94758 0.95107 1.69897 1.30125 1.06245 1.45679 0.86439 0.82276 0.79019 0.79321 1.20519 1.21042 1.19812 1.21162 0.92817 0.93617 1.07212 1.96703 1.80562 1.16853 1.97092 0.90801 0.90757 0.91215 0.81058 0.78268 0.95427 0.88977 0.96452 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.81 36.01 0.35 -0.56 16 2 C -0.09 -1.16 5.78 -106.43 -0.62 -1.77 16 3 C -0.25 -2.66 10.67 29.16 0.31 -2.35 16 4 S 0.24 2.92 22.15 -107.50 -2.38 0.54 16 5 C -0.22 -3.64 6.45 -36.80 -0.24 -3.88 16 6 C 0.56 11.85 7.74 -12.95 -0.10 11.75 16 7 O -0.51 -12.38 14.38 5.17 0.07 -12.31 16 8 N -0.70 -15.02 5.06 -56.31 -0.29 -15.31 16 9 C 0.27 6.80 2.56 -69.08 -0.18 6.62 16 10 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 11 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 12 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 15 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 16 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.05 -0.83 6.28 -40.36 -0.25 -1.08 16 21 Br 0.00 0.05 30.41 -68.01 -2.07 -2.02 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.71 7.20 -51.93 -0.37 0.34 16 24 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 25 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.38 7.23 7.65 -40.82 -0.31 6.92 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -30.08 291.92 -8.47 -38.55 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.05 Total: 2.09 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.77 Total: -7.34 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.34 Total: -39.41 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.38 Total: 0.54 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.07 Total: -2.02 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.08 -8.47 -38.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190908248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.569 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds