Wall clock time and date at job start Tue Mar 31 2020 11:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33769 * 122.45061 * 2 1 4 4 S 1.70609 * 110.98973 * 179.97438 * 3 2 1 5 5 C 1.75829 * 91.58026 * 359.97438 * 4 3 2 6 6 C 1.46471 * 125.45954 * 179.97438 * 5 4 3 7 7 O 1.21723 * 119.99824 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00309 * 0.30001 * 6 5 4 9 9 C 1.46505 * 120.00095 * 179.72445 * 8 6 5 10 10 H 1.09000 * 109.46989 * 324.99749 * 9 8 6 11 11 C 1.52996 * 109.47130 * 85.00161 * 9 8 6 12 12 C 1.50698 * 109.47013 * 205.00424 * 9 8 6 13 13 H 1.07999 * 120.00181 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00000 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00111 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00054 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46484 * 90.00114 * 16 14 12 18 18 H 1.48501 * 109.47102 * 209.99885 * 16 14 12 19 19 H 1.48495 * 109.47273 * 330.00293 * 16 14 12 20 20 C 1.36755 * 109.07757 * 0.26701 * 5 4 3 21 21 Br 1.89096 * 123.37470 * 179.73644 * 20 5 4 22 22 H 1.09007 * 109.46864 * 89.98228 * 1 2 3 23 23 H 1.08999 * 109.47490 * 209.97585 * 1 2 3 24 24 H 1.08998 * 109.47571 * 329.97689 * 1 2 3 25 25 H 1.07997 * 124.50873 * 359.97436 * 3 2 1 26 26 H 0.97000 * 120.00112 * 359.72880 * 8 6 5 27 27 H 1.09002 * 109.46807 * 60.00065 * 11 9 8 28 28 H 1.08998 * 109.47019 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47099 * 300.00036 * 11 9 8 30 30 H 0.97000 * 120.00320 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1288 0.0000 4 16 3.8968 0.7898 0.0007 5 6 3.5951 -0.9424 0.0018 6 6 4.6247 -1.9842 0.0023 7 8 4.3026 -3.1581 0.0026 8 7 5.9285 -1.6432 0.0080 9 6 6.9582 -2.6854 0.0145 10 1 6.6120 -3.5345 0.6037 11 6 7.2342 -3.1387 -1.4204 12 6 8.2243 -2.1367 0.6203 13 1 8.2587 -1.1139 0.9655 14 6 9.3392 -2.9401 0.7329 15 7 9.2975 -4.1854 0.3122 16 14 10.9089 -2.2597 1.4832 17 1 10.8982 -2.4936 2.9496 18 1 12.0818 -2.9433 0.8814 19 1 10.9942 -0.8017 1.2150 20 6 2.2452 -1.1610 -0.0045 21 35 1.4707 -2.8861 -0.0130 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8897 0.5142 25 1 1.8021 2.1226 -0.0004 26 1 6.1852 -0.7078 0.0078 27 1 7.5804 -2.2895 -2.0095 28 1 8.0006 -3.9137 -1.4155 29 1 6.3184 -3.5356 -1.8585 30 1 10.0819 -4.7505 0.3911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190908248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:21 Heat of formation + Delta-G solvation = -25.054320 kcal Electronic energy + Delta-G solvation = -16261.578391 eV Core-core repulsion = 13421.965286 eV Total energy + Delta-G solvation = -2839.613105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75267 -39.17212 -36.70973 -34.37979 -32.69618 -31.74245 -30.59671 -28.38719 -27.35327 -25.45354 -22.85643 -21.42460 -19.88270 -19.70730 -18.25756 -17.27214 -16.92952 -16.34112 -16.12466 -15.34030 -14.95032 -14.63148 -14.43551 -14.27608 -13.74922 -13.43267 -13.15704 -12.99674 -12.88576 -12.85563 -12.73096 -12.27588 -12.13134 -11.99680 -11.80515 -11.44966 -11.12717 -10.63126 -10.44152 -10.00058 -9.67148 -9.38485 -8.17747 -6.35692 -0.69084 0.03426 0.74171 1.11125 1.14488 1.46081 1.46655 1.57481 2.15715 2.29324 2.51717 3.13003 3.77300 3.94441 4.11037 4.46359 4.58498 4.75060 4.82003 4.84795 4.91043 5.07046 5.20709 5.33794 5.40102 5.55174 5.64865 5.86239 6.07082 6.69357 6.82396 7.26673 7.42193 8.88750 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.004409 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.156450 B = 6348.483832 C = 7261.206398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.112 4.112 3 C -0.217 4.217 4 S 0.289 5.711 5 C -0.274 4.274 6 C 0.562 3.438 7 O -0.558 6.558 8 N -0.699 5.699 9 C 0.273 3.727 10 H 0.003 0.997 11 C -0.133 4.133 12 C -0.549 4.549 13 H 0.073 0.927 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.973 3.027 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.258 1.258 20 C -0.050 4.050 21 Br -0.015 7.015 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.217 0.783 26 H 0.399 0.601 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.012 0.988 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 13.953 -1.175 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.355 4.355 4 S 0.557 5.443 5 C -0.397 4.397 6 C 0.347 3.653 7 O -0.439 6.439 8 N -0.348 5.348 9 C 0.171 3.829 10 H 0.021 0.979 11 C -0.192 4.192 12 C -0.587 4.587 13 H 0.092 0.908 14 C -0.184 4.184 15 N -0.554 5.554 16 Si 0.798 3.202 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.182 1.182 20 C -0.147 4.147 21 Br 0.070 6.930 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.234 0.766 26 H 0.234 0.766 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.147 13.235 -1.199 20.912 hybrid contribution -0.069 -0.541 0.297 0.621 sum -16.216 12.694 -0.902 20.613 Atomic orbital electron populations 1.20683 0.86771 1.04261 1.03776 1.18709 0.99621 0.89236 1.04909 1.25584 0.97953 1.04384 1.07578 1.82937 1.04019 0.92650 1.64669 1.24656 0.96596 1.00617 1.17813 1.17396 0.82683 0.87803 0.77390 1.90842 1.81845 1.19555 1.51616 1.46190 1.04963 1.11016 1.72680 1.18408 0.84892 0.86107 0.93533 0.97881 1.21899 0.99085 1.00972 0.97264 1.21505 0.96251 0.99296 1.41627 0.90844 1.25791 1.02288 0.94911 0.95385 1.70049 1.31078 1.07613 1.46698 0.85327 0.77799 0.78986 0.78129 1.20375 1.20901 1.18208 1.21528 0.92853 0.94025 1.06342 1.96675 1.80544 1.18716 1.97033 0.89816 0.91625 0.88448 0.76615 0.76646 0.94048 0.91202 0.96900 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.81 71.24 0.70 -0.78 16 2 C -0.11 -2.42 5.78 -21.04 -0.12 -2.55 16 3 C -0.22 -3.63 10.67 66.80 0.71 -2.92 16 4 S 0.29 6.26 22.15 -56.49 -1.25 5.01 16 5 C -0.27 -9.11 6.45 24.07 0.16 -8.95 16 6 C 0.56 24.30 7.74 86.39 0.67 24.97 16 7 O -0.56 -28.27 14.38 -4.42 -0.06 -28.33 16 8 N -0.70 -30.55 5.06 -450.26 -2.28 -32.83 16 9 C 0.27 14.47 2.56 44.24 0.11 14.58 16 10 H 0.00 0.20 7.58 -2.39 -0.02 0.19 16 11 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 12 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 14 C 0.02 0.89 5.30 84.66 0.45 1.34 16 15 N -0.92 -52.65 11.32 21.45 0.24 -52.40 16 16 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 C -0.05 -1.53 6.28 21.77 0.14 -1.39 16 21 Br -0.01 -0.48 30.41 -20.37 -0.62 -1.10 16 22 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.06 1.14 7.20 -2.39 -0.02 1.12 16 24 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 25 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 26 H 0.40 14.82 7.65 -92.71 -0.71 14.11 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -68.20 291.92 2.22 -65.97 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.47 Total: 10.77 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.70 Total: -10.90 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.04 Total: -85.24 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.25 Total: 5.01 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.62 Total: -1.10 kcal Total: -68.20 2.22 -65.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190908248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.919 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds