Wall clock time and date at job start Tue Mar 31 2020 10:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21559 * 120.00081 * 359.97438 * 11 10 9 13 13 C 1.47796 * 119.99688 * 180.02562 * 11 10 9 14 14 C 1.39606 * 120.14722 * 359.71887 * 13 11 10 15 15 C 1.38022 * 119.84607 * 179.81301 * 14 13 11 16 16 Cl 1.73605 * 119.92638 * 180.19346 * 15 14 13 17 17 C 1.38523 * 120.14649 * 0.44359 * 15 14 13 18 18 C 1.38266 * 120.29953 * 359.79359 * 17 15 14 19 19 C 1.38119 * 120.14523 * 359.97438 * 18 17 15 20 20 Br 1.89101 * 120.06891 * 179.97438 * 19 18 17 21 21 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 23 23 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 24 24 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 25 25 H 1.07996 * 120.07606 * 0.03364 * 14 13 11 26 26 H 1.08002 * 119.84944 * 179.76481 * 17 15 14 27 27 H 1.07998 * 119.92327 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5586 -5.1055 0.0020 13 6 2.7142 -6.0067 0.0016 14 6 4.0874 -5.7551 -0.0043 15 6 4.9788 -6.8088 0.0002 16 17 6.6869 -6.4983 -0.0021 17 6 4.5136 -8.1136 0.0013 18 6 3.1549 -8.3698 0.0022 19 6 2.2520 -7.3246 0.0025 20 35 0.3942 -7.6774 0.0030 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.1567 -3.4354 0.0009 25 1 4.4513 -4.7383 -0.0088 26 1 5.2154 -8.9346 0.0009 27 1 2.7989 -9.3894 0.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220947655.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:25 Heat of formation + Delta-G solvation = -27.680204 kcal Electronic energy + Delta-G solvation = -15692.807035 eV Core-core repulsion = 12715.203263 eV Total energy + Delta-G solvation = -2977.603773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28698 -39.48477 -37.53489 -36.23564 -34.50130 -33.17559 -32.61526 -30.23602 -29.22081 -25.67195 -24.37130 -23.21785 -21.59552 -19.72863 -18.18432 -17.42489 -16.98737 -16.58932 -16.28288 -16.23362 -15.77714 -15.11783 -14.77719 -14.56951 -14.01168 -13.88087 -13.12790 -13.01834 -12.94253 -12.74787 -12.73687 -12.30413 -12.11628 -11.73473 -11.56846 -11.44124 -10.81802 -10.34563 -9.97427 -9.90062 -9.65621 -8.29400 -6.45688 -0.53326 -0.15605 0.57728 0.97121 1.43453 1.44176 1.57577 1.72862 2.25491 2.46673 2.50972 3.05963 3.47282 3.55745 3.92740 4.02214 4.20282 4.55380 4.58552 4.85809 4.95053 5.12621 5.24591 5.35373 5.44300 5.64378 5.83402 6.63396 6.80066 7.20958 7.36971 8.82810 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.004854 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.582909 B = 5767.582983 C = 7896.021117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.269 3.731 10 N -0.700 5.700 11 C 0.525 3.475 12 O -0.553 6.553 13 C -0.111 4.111 14 C -0.074 4.074 15 C -0.032 4.032 16 Cl -0.045 7.045 17 C -0.067 4.067 18 C -0.077 4.077 19 C -0.059 4.059 20 Br -0.024 7.024 21 H 0.269 0.731 22 H -0.007 1.007 23 H -0.007 1.007 24 H 0.404 0.596 25 H 0.151 0.849 26 H 0.185 0.815 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 -19.599 -0.003 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.147 3.853 10 N -0.350 5.350 11 C 0.311 3.689 12 O -0.433 6.433 13 C -0.116 4.116 14 C -0.095 4.095 15 C -0.059 4.059 16 Cl -0.016 7.016 17 C -0.086 4.086 18 C -0.097 4.097 19 C -0.141 4.141 20 Br 0.063 6.937 21 H 0.078 0.922 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.240 0.760 25 H 0.169 0.831 26 H 0.202 0.798 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.904 -19.712 -0.003 22.527 hybrid contribution 0.621 1.380 -0.001 1.513 sum 11.525 -18.332 -0.004 21.654 Atomic orbital electron populations 1.70137 1.08184 1.28488 1.49916 1.26019 0.95758 1.03753 0.93858 0.85142 0.79137 0.77470 0.77682 1.17657 1.20471 1.20461 1.21623 0.94280 0.90544 1.52935 0.89913 1.18591 0.88465 0.83715 0.94531 1.46169 1.11239 1.05280 1.72335 1.18695 0.88568 0.83763 0.77833 1.90906 1.17160 1.84381 1.50833 1.19675 0.93610 0.92784 1.05528 1.21310 0.90160 1.00646 0.97347 1.20977 0.85990 0.94762 1.04156 1.98405 1.10371 1.96141 1.96698 1.21645 0.95678 0.95683 0.95615 1.21420 0.91407 0.99262 0.97610 1.22313 0.93070 0.94727 1.03947 1.96781 1.06232 1.93899 1.96826 0.92243 0.98940 0.98931 0.75984 0.83103 0.79802 0.80432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.47 15 2 C 0.01 0.33 5.46 84.65 0.46 0.79 15 3 Si 0.98 42.20 29.54 68.60 2.03 44.22 15 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 7 C -0.56 -30.11 9.28 25.60 0.24 -29.87 15 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 15 9 C 0.27 14.73 5.43 85.63 0.46 15.19 15 10 N -0.70 -30.11 5.50 -469.73 -2.58 -32.70 15 11 C 0.53 21.76 7.76 86.77 0.67 22.43 15 12 O -0.55 -26.72 13.47 -3.90 -0.05 -26.77 15 13 C -0.11 -3.42 5.88 -20.08 -0.12 -3.54 15 14 C -0.07 -1.81 9.32 22.55 0.21 -1.60 15 15 C -0.03 -0.59 6.31 22.29 0.14 -0.45 15 16 Cl -0.05 -0.75 28.95 -2.72 -0.08 -0.83 15 17 C -0.07 -0.96 9.82 22.34 0.22 -0.74 15 18 C -0.08 -1.35 9.77 22.25 0.22 -1.14 15 19 C -0.06 -1.61 6.26 22.58 0.14 -1.47 15 20 Br -0.02 -0.75 30.39 -20.37 -0.62 -1.37 15 21 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 15 23 H -0.01 -0.45 8.14 -2.38 -0.02 -0.46 15 24 H 0.40 14.52 6.35 -92.71 -0.59 13.93 15 25 H 0.15 3.42 6.41 -2.91 -0.02 3.40 15 26 H 0.18 1.25 8.06 -2.91 -0.02 1.23 15 27 H 0.18 1.99 8.06 -2.91 -0.02 1.96 15 Total: -1.00 -69.19 278.81 2.26 -66.93 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.63 Total: 6.38 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 2.65 Total: -0.40 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -2.30 Total: -88.17 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -0.62 Total: -1.37 kcal Total: -69.19 2.26 -66.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220947655.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.248 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds