Wall clock time and date at job start Tue Mar 31 2020 10:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47210 * 239.99988 * 3 2 1 5 5 H 1.48505 * 109.46689 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47291 * 119.99245 * 3 2 1 7 7 C 1.37880 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99958 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00046 * 179.97438 * 10 9 7 12 12 O 1.21557 * 120.00315 * 0.02562 * 11 10 9 13 13 C 1.47860 * 120.00104 * 179.97438 * 11 10 9 14 14 C 1.39582 * 120.13136 * 180.02562 * 13 11 10 15 15 C 1.38061 * 119.85458 * 179.97438 * 14 13 11 16 16 Cl 1.73606 * 119.93486 * 180.02562 * 15 14 13 17 17 C 1.38475 * 120.13150 * 0.02562 * 15 14 13 18 18 C 1.38405 * 120.27091 * 359.97438 * 17 15 14 19 19 Br 1.89099 * 119.93368 * 180.02562 * 18 17 15 20 20 C 1.38080 * 120.13850 * 0.02562 * 18 17 15 21 21 H 0.96993 * 120.00095 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47256 * 59.99471 * 9 7 2 23 23 H 1.09010 * 109.46798 * 300.00160 * 9 7 2 24 24 H 0.96994 * 119.99876 * 0.02562 * 10 9 7 25 25 H 1.08000 * 120.07582 * 0.02562 * 14 13 11 26 26 H 1.08002 * 119.86465 * 179.72527 * 17 15 14 27 27 H 1.07996 * 120.06713 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7539 -4.8833 0.0025 12 8 0.5588 -5.1055 0.0017 13 6 2.7148 -6.0072 0.0032 14 6 2.2525 -7.3242 0.0034 15 6 3.1547 -8.3692 0.0035 16 17 2.5821 -10.0081 0.0031 17 6 4.5155 -8.1128 0.0039 18 6 4.9797 -6.8089 0.0037 19 35 6.8400 -6.4696 0.0035 20 6 4.0873 -5.7552 0.0036 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 3.1568 -3.4354 0.0028 25 1 1.1914 -7.5254 0.0027 26 1 5.2175 -8.9335 0.0085 27 1 4.4508 -4.7383 0.0030 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226406579.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:20 Heat of formation + Delta-G solvation = -23.906142 kcal Electronic energy + Delta-G solvation = -15457.144293 eV Core-core repulsion = 12479.704176 eV Total energy + Delta-G solvation = -2977.440117 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.10383 -38.25200 -36.71421 -34.43719 -32.65883 -32.55910 -31.22777 -29.51252 -27.41032 -24.34158 -22.92445 -22.08105 -20.03598 -18.31484 -16.67607 -16.21496 -15.82526 -15.24916 -14.91227 -14.74468 -14.30094 -14.02363 -13.77794 -13.03906 -12.36034 -12.26393 -12.08937 -11.95232 -11.76353 -11.26267 -11.06281 -10.95074 -10.83287 -10.62374 -10.38208 -9.50738 -9.40983 -9.22172 -9.00740 -8.81552 -8.04318 -6.22425 -4.30212 0.49730 0.68562 1.17441 1.83498 2.76915 3.22424 3.27461 3.28611 3.74710 3.78271 4.28992 4.50435 4.68507 4.80076 4.87070 5.03710 5.13981 5.33164 5.64286 5.80029 5.94848 6.18468 7.17873 7.22287 7.41001 7.55771 7.88199 8.42563 8.64386 8.87706 9.36233 10.87619 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.003968 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.450693 B = 7054.946516 C = 8961.252847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.699 5.699 11 C 0.540 3.460 12 O -0.542 6.542 13 C -0.099 4.099 14 C -0.042 4.042 15 C -0.039 4.039 16 Cl -0.056 7.056 17 C -0.069 4.069 18 C -0.088 4.088 19 Br -0.034 7.034 20 C -0.057 4.057 21 H 0.267 0.733 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.391 0.609 25 H 0.154 0.846 26 H 0.145 0.855 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.999 -17.185 0.014 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.347 5.347 11 C 0.324 3.676 12 O -0.422 6.422 13 C -0.104 4.104 14 C -0.062 4.062 15 C -0.066 4.066 16 Cl -0.027 7.027 17 C -0.089 4.089 18 C -0.168 4.168 19 Br 0.051 6.949 20 C -0.077 4.077 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.225 0.775 25 H 0.172 0.828 26 H 0.163 0.837 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.602 -17.166 0.014 21.902 hybrid contribution 0.475 0.782 0.001 0.915 sum 14.078 -16.383 0.015 21.601 Atomic orbital electron populations 1.69952 1.06116 1.27577 1.48466 1.24940 0.94928 0.99477 0.94533 0.86459 0.79431 0.82193 0.78763 1.19999 1.21016 1.19994 1.21152 0.93258 0.90308 1.53824 0.91849 1.19217 0.88173 0.81589 0.98151 1.46463 1.11471 1.05836 1.70958 1.17995 0.87736 0.83114 0.78746 1.90768 1.15757 1.84676 1.51003 1.20286 0.93216 0.94454 1.02405 1.21342 1.01203 0.89899 0.93719 1.20689 0.93158 0.86551 1.06220 1.98388 1.89079 1.18300 1.96939 1.21087 0.94148 0.95941 0.97757 1.21554 0.91507 0.95022 1.08673 1.96774 1.04275 1.96118 1.97703 1.21497 0.91749 0.99369 0.95112 0.92276 0.95058 0.95070 0.77508 0.82800 0.83676 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.29 55.43 0.74 -24.73 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.55 -14.39 9.28 -34.44 -0.32 -14.71 15 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 15 9 C 0.25 6.37 5.43 -5.19 -0.03 6.34 15 10 N -0.70 -14.19 5.50 -62.42 -0.34 -14.54 15 11 C 0.54 10.52 7.77 -12.33 -0.10 10.42 15 12 O -0.54 -12.57 16.35 5.32 0.09 -12.48 15 13 C -0.10 -1.47 5.87 -104.97 -0.62 -2.09 15 14 C -0.04 -0.56 9.37 -39.15 -0.37 -0.93 15 15 C -0.04 -0.44 6.31 -39.56 -0.25 -0.69 15 16 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 15 17 C -0.07 -0.71 9.56 -39.43 -0.38 -1.08 15 18 C -0.09 -0.97 6.22 -39.58 -0.25 -1.22 15 19 Br -0.03 -0.33 33.69 -68.01 -2.29 -2.63 15 20 C -0.06 -0.71 9.28 -39.15 -0.36 -1.07 15 21 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.03 0.88 8.14 -51.92 -0.42 0.46 15 24 H 0.39 6.72 6.35 -40.82 -0.26 6.47 15 25 H 0.15 2.11 7.65 -52.49 -0.40 1.71 15 26 H 0.15 1.19 8.06 -52.49 -0.42 0.76 15 27 H 0.15 1.68 6.40 -52.49 -0.34 1.34 15 LS Contribution 283.84 15.07 4.28 4.28 Total: -1.00 -29.60 283.84 -8.61 -38.21 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -1.80 Total: 1.92 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.76 Total: -3.35 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.39 Total: -39.26 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.29 Total: -2.63 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.60 -8.61 -38.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406579.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.304 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds