Wall clock time and date at job start Tue Mar 31 2020 10:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47210 * 239.99988 * 3 2 1 5 5 H 1.48505 * 109.46689 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47291 * 119.99245 * 3 2 1 7 7 C 1.37880 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99958 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00046 * 179.97438 * 10 9 7 12 12 O 1.21557 * 120.00315 * 0.02562 * 11 10 9 13 13 C 1.47860 * 120.00104 * 179.97438 * 11 10 9 14 14 C 1.39582 * 120.13136 * 180.02562 * 13 11 10 15 15 C 1.38061 * 119.85458 * 179.97438 * 14 13 11 16 16 Cl 1.73606 * 119.93486 * 180.02562 * 15 14 13 17 17 C 1.38475 * 120.13150 * 0.02562 * 15 14 13 18 18 C 1.38405 * 120.27091 * 359.97438 * 17 15 14 19 19 Br 1.89099 * 119.93368 * 180.02562 * 18 17 15 20 20 C 1.38080 * 120.13850 * 0.02562 * 18 17 15 21 21 H 0.96993 * 120.00095 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47256 * 59.99471 * 9 7 2 23 23 H 1.09010 * 109.46798 * 300.00160 * 9 7 2 24 24 H 0.96994 * 119.99876 * 0.02562 * 10 9 7 25 25 H 1.08000 * 120.07582 * 0.02562 * 14 13 11 26 26 H 1.08002 * 119.86465 * 179.72527 * 17 15 14 27 27 H 1.07996 * 120.06713 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7539 -4.8833 0.0025 12 8 0.5588 -5.1055 0.0017 13 6 2.7148 -6.0072 0.0032 14 6 2.2525 -7.3242 0.0034 15 6 3.1547 -8.3692 0.0035 16 17 2.5821 -10.0081 0.0031 17 6 4.5155 -8.1128 0.0039 18 6 4.9797 -6.8089 0.0037 19 35 6.8400 -6.4696 0.0035 20 6 4.0873 -5.7552 0.0036 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 3.1568 -3.4354 0.0028 25 1 1.1914 -7.5254 0.0027 26 1 5.2175 -8.9335 0.0085 27 1 4.4508 -4.7383 0.0030 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406579.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:19 Heat of formation + Delta-G solvation = -42.219739 kcal Electronic energy + Delta-G solvation = -15457.938430 eV Core-core repulsion = 12479.704176 eV Total energy + Delta-G solvation = -2978.234254 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37571 -39.61695 -37.61643 -36.30013 -34.50020 -33.60345 -32.39957 -30.43954 -29.32150 -25.82142 -24.31972 -23.40681 -21.60408 -19.72640 -18.24288 -17.54284 -17.17308 -16.70036 -16.33396 -16.25973 -15.91681 -14.99791 -14.90442 -14.68891 -14.04383 -13.96676 -13.31213 -13.09653 -12.97008 -12.77869 -12.68694 -12.25029 -12.15831 -11.80792 -11.53308 -11.44990 -11.06767 -10.81032 -10.26463 -9.93514 -9.89527 -8.29381 -6.46119 -0.55937 -0.28278 0.29072 0.93200 1.44516 1.48067 1.55734 1.56189 2.20701 2.44276 2.45216 3.05973 3.43163 3.71457 3.75371 3.84332 4.01326 4.18769 4.67231 4.80349 4.89177 5.07746 5.18353 5.21182 5.39164 5.61057 5.81576 6.61223 6.73425 7.17246 7.31816 8.82433 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.003968 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.450693 B = 7054.946516 C = 8961.252847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.541 3.459 12 O -0.588 6.588 13 C -0.117 4.117 14 C -0.046 4.046 15 C -0.037 4.037 16 Cl -0.041 7.041 17 C -0.048 4.048 18 C -0.089 4.089 19 Br -0.013 7.013 20 C -0.049 4.049 21 H 0.269 0.731 22 H -0.006 1.006 23 H -0.006 1.006 24 H 0.408 0.592 25 H 0.144 0.856 26 H 0.175 0.825 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.175 -17.803 0.016 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.345 5.345 11 C 0.328 3.672 12 O -0.471 6.471 13 C -0.121 4.121 14 C -0.066 4.066 15 C -0.065 4.065 16 Cl -0.012 7.012 17 C -0.069 4.069 18 C -0.169 4.169 19 Br 0.072 6.928 20 C -0.070 4.070 21 H 0.078 0.922 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.245 0.755 25 H 0.162 0.838 26 H 0.192 0.808 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 16.831 -17.815 0.016 24.509 hybrid contribution -0.470 0.819 0.000 0.944 sum 16.361 -16.997 0.016 23.592 Atomic orbital electron populations 1.70117 1.08214 1.28691 1.49702 1.26028 0.95757 1.03797 0.93792 0.85234 0.77953 0.76685 0.79541 1.18633 1.21173 1.18624 1.21561 0.94368 0.90398 1.53265 0.89669 1.18656 0.88540 0.83769 0.94717 1.46141 1.11542 1.05223 1.71567 1.18638 0.87991 0.83706 0.76818 1.90734 1.18140 1.85387 1.52792 1.19729 0.93174 0.92995 1.06200 1.21288 1.01264 0.90046 0.93989 1.20652 0.93295 0.86712 1.05809 1.98399 1.89089 1.16907 1.96834 1.21429 0.93993 0.96510 0.94922 1.21641 0.92398 0.94829 1.07984 1.96814 1.02209 1.96125 1.97607 1.21532 0.90737 1.00457 0.94278 0.92194 0.98775 0.98789 0.75500 0.83849 0.80794 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.29 21.45 0.28 -54.81 15 2 C 0.01 0.34 5.46 84.66 0.46 0.80 15 3 Si 0.98 41.45 29.54 68.60 2.03 43.48 15 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 5 H -0.29 -12.04 7.11 99.48 0.71 -11.34 15 6 H -0.26 -10.44 7.11 99.48 0.71 -9.74 15 7 C -0.56 -29.62 9.28 25.60 0.24 -29.38 15 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 15 9 C 0.27 14.25 5.43 85.63 0.46 14.72 15 10 N -0.70 -29.00 5.50 -469.68 -2.58 -31.58 15 11 C 0.54 21.88 7.77 86.79 0.67 22.55 15 12 O -0.59 -28.88 16.35 -3.90 -0.06 -28.94 15 13 C -0.12 -3.45 5.87 -20.09 -0.12 -3.57 15 14 C -0.05 -1.22 9.37 22.55 0.21 -1.00 15 15 C -0.04 -0.77 6.31 22.28 0.14 -0.63 15 16 Cl -0.04 -0.76 28.95 -2.72 -0.08 -0.84 15 17 C -0.05 -0.84 9.56 22.37 0.21 -0.62 15 18 C -0.09 -1.71 6.22 22.27 0.14 -1.57 15 19 Br -0.01 -0.21 33.69 -20.37 -0.69 -0.90 15 20 C -0.05 -1.16 9.28 22.55 0.21 -0.95 15 21 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 22 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 23 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 15 24 H 0.41 13.91 6.35 -92.71 -0.59 13.32 15 25 H 0.14 4.07 7.65 -2.91 -0.02 4.05 15 26 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 27 H 0.16 3.26 6.40 -2.91 -0.02 3.24 15 Total: -1.00 -66.10 283.84 2.17 -63.93 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.64 Total: 9.30 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 2.63 Total: 0.36 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.30 Total: -86.39 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.06 Total: -28.94 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.90 kcal Total: -66.10 2.17 -63.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406579.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.710 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds