Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48496 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46786 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47225 * 59.99420 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21563 * 120.00283 * 359.72077 * 11 10 9 13 13 C 1.47730 * 119.99572 * 179.72382 * 11 10 9 14 14 C 1.39655 * 120.14184 * 359.72563 * 13 11 10 15 15 C 1.37849 * 119.87616 * 179.67634 * 14 13 11 16 16 C 1.38558 * 120.15779 * 0.61667 * 15 14 13 17 17 Cl 1.73598 * 119.85918 * 179.69573 * 16 15 14 18 18 C 1.38441 * 120.28660 * 359.67989 * 16 15 14 19 19 C 1.38058 * 120.11864 * 359.97438 * 18 16 15 20 20 Br 1.89091 * 120.07888 * 179.97438 * 19 18 16 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.08004 * 120.05988 * 359.97438 * 14 13 11 26 26 H 1.07997 * 119.92085 * 180.29701 * 15 14 13 27 27 H 1.07998 * 119.94482 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5588 -5.1055 -0.0046 13 6 2.7141 -6.0061 -0.0086 14 6 4.0877 -5.7542 -0.0134 15 6 4.9787 -6.8060 -0.0112 16 6 4.5146 -8.1115 -0.0172 17 17 5.6436 -9.4302 -0.0224 18 6 3.1543 -8.3689 -0.0188 19 6 2.2516 -7.3243 -0.0138 20 35 0.3939 -7.6771 -0.0166 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 4.4512 -4.7371 -0.0139 26 1 6.0411 -6.6120 -0.0101 27 1 2.7986 -9.3886 -0.0231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226406617.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = -8.509848 kcal Electronic energy + Delta-G solvation = -15617.954255 eV Core-core repulsion = 12641.181772 eV Total energy + Delta-G solvation = -2976.772484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.02725 -38.17250 -36.67983 -34.39528 -32.67434 -32.20637 -31.16862 -29.37120 -27.27039 -24.07379 -23.00309 -22.01622 -20.01847 -18.24993 -16.74765 -16.15520 -15.79374 -14.97270 -14.84852 -14.71276 -14.19982 -13.83469 -13.67092 -13.09103 -12.38338 -12.21906 -12.06130 -11.88720 -11.64069 -11.13898 -11.04672 -10.94436 -10.73628 -10.59198 -10.20397 -9.42373 -9.14501 -8.88356 -8.76401 -8.53878 -7.94034 -6.20745 -4.28021 0.47417 0.83499 1.49988 1.91391 2.87775 3.20995 3.28162 3.30804 3.84127 3.85382 4.31055 4.42093 4.65238 4.88526 5.05861 5.13103 5.15760 5.39112 5.70651 5.86578 5.88793 6.24681 7.23778 7.31211 7.46353 7.59470 7.91343 8.49835 8.70138 8.95601 9.38443 10.89342 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.004085 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.848192 B = 6853.512210 C = 8394.204826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.701 5.701 11 C 0.526 3.474 12 O -0.517 6.517 13 C -0.093 4.093 14 C -0.071 4.071 15 C -0.105 4.105 16 C -0.018 4.018 17 Cl -0.062 7.062 18 C -0.093 4.093 19 C -0.040 4.040 20 Br 0.002 6.998 21 H 0.266 0.734 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.388 0.612 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -18.070 -0.051 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.350 5.350 11 C 0.310 3.690 12 O -0.394 6.394 13 C -0.098 4.098 14 C -0.091 4.091 15 C -0.124 4.124 16 C -0.046 4.046 17 Cl -0.033 7.033 18 C -0.114 4.114 19 C -0.121 4.121 20 Br 0.089 6.911 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.222 0.778 25 H 0.165 0.835 26 H 0.162 0.838 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.632 -18.305 -0.050 19.832 hybrid contribution 1.494 0.993 -0.001 1.793 sum 9.126 -17.312 -0.051 19.570 Atomic orbital electron populations 1.69977 1.06094 1.27271 1.48738 1.24946 0.94919 0.99464 0.94640 0.86361 0.79810 0.82948 0.77790 1.19627 1.20774 1.20777 1.21232 0.93272 0.90369 1.53416 0.91853 1.19175 0.88176 0.81575 0.98058 1.46459 1.11232 1.05782 1.71561 1.18053 0.88180 0.83271 0.79525 1.90934 1.15290 1.83764 1.49448 1.20298 0.94548 0.93791 1.01199 1.21396 0.91205 0.99984 0.96503 1.21107 1.01114 0.90156 0.99988 1.20995 0.90254 0.89412 1.03970 1.98383 1.60776 1.47325 1.96779 1.20939 0.90413 0.99479 1.00561 1.21906 0.93420 0.93885 1.02895 1.96812 1.03405 1.94098 1.96753 0.92439 0.95162 0.95160 0.77796 0.83500 0.83814 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.29 55.43 0.74 -24.83 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 7 C -0.54 -14.35 9.28 -34.44 -0.32 -14.67 15 8 H 0.06 1.55 7.60 -52.49 -0.40 1.16 15 9 C 0.25 6.43 5.43 -5.19 -0.03 6.40 15 10 N -0.70 -14.26 5.50 -62.46 -0.34 -14.60 15 11 C 0.53 10.36 7.76 -12.38 -0.10 10.26 15 12 O -0.52 -11.77 13.47 5.31 0.07 -11.70 15 13 C -0.09 -1.43 5.88 -104.94 -0.62 -2.05 15 14 C -0.07 -0.85 9.54 -39.20 -0.37 -1.22 15 15 C -0.10 -1.05 9.81 -39.61 -0.39 -1.44 15 16 C -0.02 -0.19 6.33 -39.39 -0.25 -0.44 15 17 Cl -0.06 -0.56 28.95 -51.86 -1.50 -2.06 15 18 C -0.09 -1.08 9.55 -39.57 -0.38 -1.46 15 19 C -0.04 -0.57 6.26 -39.10 -0.24 -0.82 15 20 Br 0.00 0.04 30.39 -68.01 -2.07 -2.03 15 21 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.03 0.86 8.14 -51.92 -0.42 0.44 15 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.39 6.63 6.35 -40.82 -0.26 6.37 15 25 H 0.15 1.48 6.40 -52.48 -0.34 1.15 15 26 H 0.14 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.15 1.41 8.06 -52.49 -0.42 0.99 15 LS Contribution 278.80 15.07 4.20 4.20 Total: -1.00 -30.24 278.80 -8.53 -38.77 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -1.82 Total: 0.61 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.79 Total: -3.78 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.39 Total: -39.43 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.07 Total: -11.70 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.07 Total: -2.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.24 -8.53 -38.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406617.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.262 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds