Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48496 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46786 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47225 * 59.99420 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21563 * 120.00283 * 359.72077 * 11 10 9 13 13 C 1.47730 * 119.99572 * 179.72382 * 11 10 9 14 14 C 1.39655 * 120.14184 * 359.72563 * 13 11 10 15 15 C 1.37849 * 119.87616 * 179.67634 * 14 13 11 16 16 C 1.38558 * 120.15779 * 0.61667 * 15 14 13 17 17 Cl 1.73598 * 119.85918 * 179.69573 * 16 15 14 18 18 C 1.38441 * 120.28660 * 359.67989 * 16 15 14 19 19 C 1.38058 * 120.11864 * 359.97438 * 18 16 15 20 20 Br 1.89091 * 120.07888 * 179.97438 * 19 18 16 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.08004 * 120.05988 * 359.97438 * 14 13 11 26 26 H 1.07997 * 119.92085 * 180.29701 * 15 14 13 27 27 H 1.07998 * 119.94482 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5588 -5.1055 -0.0046 13 6 2.7141 -6.0061 -0.0086 14 6 4.0877 -5.7542 -0.0134 15 6 4.9787 -6.8060 -0.0112 16 6 4.5146 -8.1115 -0.0172 17 17 5.6436 -9.4302 -0.0224 18 6 3.1543 -8.3689 -0.0188 19 6 2.2516 -7.3243 -0.0138 20 35 0.3939 -7.6771 -0.0166 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 4.4512 -4.7371 -0.0139 26 1 6.0411 -6.6120 -0.0101 27 1 2.7986 -9.3886 -0.0231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406617.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = -27.643459 kcal Electronic energy + Delta-G solvation = -15618.783951 eV Core-core repulsion = 12641.181772 eV Total energy + Delta-G solvation = -2977.602179 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26805 -39.48931 -37.54362 -36.22358 -34.48015 -33.36051 -32.34754 -30.45099 -29.16551 -25.55099 -24.32020 -23.33388 -21.56367 -19.65126 -18.20376 -17.46489 -17.25575 -16.55673 -16.25204 -16.08229 -15.68798 -14.83984 -14.80850 -14.59011 -14.00229 -13.89544 -13.45806 -12.96014 -12.90398 -12.74788 -12.72238 -12.23799 -11.96930 -11.77999 -11.76740 -11.42382 -10.80482 -10.11996 -10.00050 -9.97836 -9.68691 -8.27796 -6.43984 -0.58576 -0.09103 0.48090 0.99976 1.45023 1.45726 1.59017 1.71394 2.27171 2.48653 2.53849 3.07773 3.50375 3.70164 3.84975 4.00322 4.07287 4.52166 4.70379 4.90520 4.93957 5.14799 5.26565 5.33926 5.46845 5.67488 5.85172 6.65728 6.83757 7.23417 7.40914 8.84398 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.004085 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.848192 B = 6853.512210 C = 8394.204826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.269 3.731 10 N -0.697 5.697 11 C 0.524 3.476 12 O -0.556 6.556 13 C -0.118 4.118 14 C -0.062 4.062 15 C -0.090 4.090 16 C -0.010 4.010 17 Cl -0.040 7.040 18 C -0.089 4.089 19 C -0.051 4.051 20 Br -0.022 7.022 21 H 0.268 0.732 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.406 0.594 25 H 0.166 0.834 26 H 0.181 0.819 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.021 -18.469 -0.056 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.147 3.853 10 N -0.348 5.348 11 C 0.310 3.690 12 O -0.436 6.436 13 C -0.124 4.124 14 C -0.081 4.081 15 C -0.109 4.109 16 C -0.039 4.039 17 Cl -0.011 7.011 18 C -0.110 4.110 19 C -0.133 4.133 20 Br 0.065 6.935 21 H 0.077 0.923 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.243 0.757 25 H 0.184 0.816 26 H 0.198 0.802 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.400 -18.742 -0.055 21.936 hybrid contribution 0.423 0.948 0.000 1.038 sum 11.822 -17.793 -0.055 21.363 Atomic orbital electron populations 1.70141 1.08252 1.28444 1.50035 1.26044 0.95751 1.03847 0.93954 0.85132 0.79244 0.77432 0.77541 1.17396 1.20642 1.20652 1.21636 0.94377 0.90416 1.52716 0.89615 1.18577 0.88521 0.83813 0.94423 1.46119 1.11311 1.05078 1.72320 1.18722 0.88578 0.83852 0.77816 1.90907 1.17440 1.84444 1.50839 1.19944 0.95084 0.92180 1.05163 1.21593 0.89639 1.01670 0.95241 1.21464 1.02518 0.89128 0.97741 1.21152 0.90158 0.90425 1.02120 1.98404 1.59770 1.46413 1.96512 1.21085 0.90605 0.99506 0.99794 1.21959 0.92661 0.94363 1.04278 1.96781 1.05717 1.94088 1.96894 0.92318 0.99092 0.99094 0.75693 0.81635 0.80194 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 15 2 C 0.00 0.20 5.46 84.66 0.46 0.66 15 3 Si 0.98 41.49 29.54 68.60 2.03 43.52 15 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.55 -29.29 9.28 25.60 0.24 -29.05 15 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 15 9 C 0.27 14.43 5.43 85.63 0.46 14.90 15 10 N -0.70 -28.83 5.50 -469.81 -2.58 -31.41 15 11 C 0.52 21.18 7.76 86.75 0.67 21.85 15 12 O -0.56 -26.71 13.47 -3.91 -0.05 -26.77 15 13 C -0.12 -3.55 5.88 -20.07 -0.12 -3.67 15 14 C -0.06 -1.30 9.54 22.52 0.21 -1.08 15 15 C -0.09 -1.42 9.81 22.25 0.22 -1.21 15 16 C -0.01 -0.18 6.33 22.39 0.14 -0.04 15 17 Cl -0.04 -0.58 28.95 -2.72 -0.08 -0.66 15 18 C -0.09 -1.87 9.55 22.28 0.21 -1.66 15 19 C -0.05 -1.44 6.26 22.58 0.14 -1.30 15 20 Br -0.02 -0.69 30.39 -20.37 -0.62 -1.31 15 21 H 0.27 14.92 8.31 -92.71 -0.77 14.14 15 22 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 15 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 24 H 0.41 13.46 6.35 -92.71 -0.59 12.87 15 25 H 0.17 2.78 6.40 -2.91 -0.02 2.76 15 26 H 0.18 1.62 8.06 -2.91 -0.02 1.59 15 27 H 0.16 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -68.58 278.80 2.26 -66.32 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.63 Total: 6.07 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 2.65 Total: -0.61 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.30 Total: -86.56 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.62 Total: -1.31 kcal Total: -68.58 2.26 -66.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406617.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.676 kcal (2) G-P(sol) polarization free energy of solvation -68.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds