Wall clock time and date at job start Tue Mar 31 2020 12:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47072 * 2 1 4 4 H 1.09002 * 109.47168 * 305.19386 * 3 2 1 5 5 C 1.50695 * 109.47267 * 185.19120 * 3 2 1 6 6 H 1.08002 * 119.99893 * 240.00344 * 5 3 2 7 7 C 1.37876 * 119.99985 * 59.99875 * 5 3 2 8 8 N 1.31516 * 120.00020 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46856 * 269.99287 * 9 7 5 11 11 H 1.48491 * 109.47443 * 29.99530 * 9 7 5 12 12 H 1.48508 * 109.47326 * 150.00084 * 9 7 5 13 13 N 1.46905 * 109.47152 * 65.19260 * 3 2 1 14 14 C 1.46900 * 111.00136 * 205.80254 * 13 3 2 15 15 C 1.53002 * 109.47211 * 174.88018 * 14 13 3 16 16 C 1.50693 * 109.47240 * 179.97438 * 15 14 13 17 17 C 1.33358 * 125.19441 * 89.99449 * 16 15 14 18 18 C 1.38459 * 114.93230 * 180.02562 * 17 16 15 19 19 C 1.33477 * 114.88729 * 0.02562 * 18 17 16 20 20 Br 1.89109 * 125.20300 * 180.02562 * 19 18 17 21 21 S 1.75876 * 109.58874 * 359.73743 * 19 18 17 22 22 H 1.09004 * 109.46957 * 54.17628 * 1 2 3 23 23 H 1.08999 * 109.46919 * 174.17712 * 1 2 3 24 24 H 1.08994 * 109.47095 * 294.17168 * 1 2 3 25 25 H 1.08997 * 109.46855 * 240.00100 * 2 1 3 26 26 H 1.09002 * 109.47124 * 120.00160 * 2 1 3 27 27 H 0.97000 * 119.99637 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99984 * 81.84449 * 13 3 2 29 29 H 1.09005 * 109.46220 * 294.87284 * 14 13 3 30 30 H 1.08991 * 109.47221 * 54.87428 * 14 13 3 31 31 H 1.09000 * 109.46599 * 299.99474 * 15 14 13 32 32 H 1.08997 * 109.47388 * 59.99163 * 15 14 13 33 33 H 1.08001 * 122.53593 * 359.97438 * 17 16 15 34 34 H 1.07997 * 122.55809 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6027 1.9825 -0.8398 5 6 3.5415 1.4445 -0.1285 6 1 4.1492 1.8882 0.6462 7 6 4.1394 0.8798 -1.2352 8 7 5.4498 0.8811 -1.3471 9 14 3.0882 0.1130 -2.5754 10 1 2.8675 -1.3235 -2.2702 11 1 1.7798 0.8122 -2.6393 12 1 3.7819 0.2403 -3.8824 13 7 1.6554 2.0979 1.2572 14 6 1.5575 3.5533 1.0837 15 6 1.0331 4.1866 2.3740 16 6 0.9333 5.6797 2.1963 17 6 -0.1399 6.3299 1.7447 18 6 0.0014 7.7050 1.6652 19 6 1.1909 8.1707 2.0522 20 35 1.6972 9.9928 2.0633 21 16 2.2124 6.8314 2.5581 22 1 -0.3633 0.6015 -0.8333 23 1 -0.3633 -1.0224 -0.1043 24 1 -0.3633 0.4208 0.9375 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.8704 0.4841 -2.1259 28 1 2.2991 1.8645 1.9983 29 1 2.5430 3.9588 0.8544 30 1 0.8732 3.7764 0.2653 31 1 0.0477 3.7810 2.6034 32 1 1.7174 3.9634 3.1926 33 1 -1.0501 5.8223 1.4616 34 1 -0.7901 8.3513 1.3158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226411547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:00 Heat of formation + Delta-G solvation = 6.867407 kcal Electronic energy + Delta-G solvation = -16189.628069 eV Core-core repulsion = 13487.232288 eV Total energy + Delta-G solvation = -2702.395780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21222 -38.22145 -35.27458 -34.03054 -32.88422 -31.39163 -29.03239 -27.30146 -24.85598 -24.07132 -22.76976 -21.67762 -20.11725 -19.10859 -18.16848 -17.08564 -16.60757 -16.11702 -15.55693 -15.26189 -14.95150 -14.39881 -14.36543 -13.92232 -13.84772 -13.59866 -13.37206 -13.17493 -12.89348 -12.74058 -12.48215 -12.16773 -12.05871 -11.76198 -11.69317 -11.53281 -11.32178 -11.27365 -11.17416 -10.70035 -9.57519 -9.51529 -9.11365 -8.34306 -6.39521 -0.23904 0.05924 0.75671 0.90875 1.29751 1.34663 1.45178 1.63906 2.29141 3.01567 3.41602 4.01725 4.11326 4.29588 4.39413 4.43249 4.48576 4.53734 4.72260 4.75085 4.88176 4.95836 5.01870 5.14737 5.19430 5.21646 5.34001 5.42247 5.47353 5.50575 5.66202 6.06524 6.37961 6.61489 6.78347 7.29702 8.82059 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.003002 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.128969 B = 9324.054222 C = 9927.387533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.190 3.810 4 H 0.024 0.976 5 C -0.547 4.547 6 H 0.033 0.967 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.246 1.246 12 H -0.302 1.302 13 N -0.666 5.666 14 C 0.074 3.926 15 C -0.037 4.037 16 C -0.154 4.154 17 C -0.141 4.141 18 C -0.082 4.082 19 C -0.226 4.226 20 Br 0.008 6.992 21 S 0.123 5.877 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.265 0.735 28 H 0.334 0.666 29 H 0.003 0.997 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.221 16.066 8.099 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.080 3.920 4 H 0.042 0.958 5 C -0.586 4.586 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.170 1.170 12 H -0.230 1.230 13 N -0.295 5.295 14 C -0.056 4.056 15 C -0.077 4.077 16 C -0.273 4.273 17 C -0.171 4.171 18 C -0.116 4.116 19 C -0.423 4.423 20 Br 0.092 6.908 21 S 0.386 5.614 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.188 0.812 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.088 16.499 8.476 22.701 hybrid contribution 0.107 -0.324 -1.384 1.425 sum -12.981 16.174 7.093 21.919 Atomic orbital electron populations 1.21633 0.94324 1.00800 1.02251 1.21758 0.96674 0.97431 0.99701 1.19441 0.91027 0.92220 0.89313 0.95783 1.22094 0.93004 1.37737 1.05805 0.94917 1.25870 0.95809 0.96066 1.00569 1.70068 1.11039 1.46901 1.30710 0.85826 0.79492 0.79710 0.77246 1.19045 1.16974 1.22994 1.60768 1.53978 1.07145 1.07580 1.21785 0.98090 0.88465 0.97288 1.20096 1.04282 0.85987 0.97302 1.24821 0.96825 0.99834 1.05836 1.20365 1.00508 0.93093 1.03139 1.20482 0.96274 0.95928 0.98917 1.26179 1.01995 0.95943 1.18134 1.96678 1.91912 1.04142 1.98089 1.84663 1.17193 0.95227 1.64319 0.93945 0.92681 0.90931 0.95092 0.92549 0.92605 0.84976 0.97877 0.91536 0.87084 0.90665 0.81209 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.73 71.98 0.70 -3.53 16 2 C -0.12 -4.76 5.11 30.60 0.16 -4.60 16 3 C 0.19 8.45 1.57 44.17 0.07 8.52 16 4 H 0.02 1.12 6.76 -2.39 -0.02 1.11 16 5 C -0.55 -30.37 9.05 25.60 0.23 -30.14 16 6 H 0.03 2.02 7.97 -2.91 -0.02 1.99 16 7 C 0.02 0.86 5.45 84.65 0.46 1.32 16 8 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 9 Si 0.95 44.74 24.41 68.60 1.67 46.41 16 10 H -0.26 -11.84 6.83 99.48 0.68 -11.16 16 11 H -0.25 -10.73 6.53 99.48 0.65 -10.08 16 12 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 13 N -0.67 -24.60 5.79 -495.45 -2.87 -27.47 16 14 C 0.07 2.47 5.49 86.30 0.47 2.95 16 15 C -0.04 -0.92 6.01 29.85 0.18 -0.74 16 16 C -0.15 -3.69 5.76 24.58 0.14 -3.55 16 17 C -0.14 -2.87 10.05 21.22 0.21 -2.66 16 18 C -0.08 -1.62 10.11 21.24 0.21 -1.41 16 19 C -0.23 -5.12 6.97 66.74 0.47 -4.66 16 20 Br 0.01 0.16 34.07 -20.37 -0.69 -0.53 16 21 S 0.12 3.10 23.33 -56.49 -1.32 1.78 16 22 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 2.14 7.92 -2.39 -0.02 2.12 16 25 H 0.03 1.34 3.22 -2.39 -0.01 1.33 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.33 12.60 8.45 -89.70 -0.76 11.84 16 29 H 0.00 0.11 8.11 -2.38 -0.02 0.09 16 30 H 0.07 2.19 7.93 -2.39 -0.02 2.17 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -62.76 312.81 0.66 -62.10 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.26 Total: 14.91 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 3.31 Total: -38.49 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.57 Total: -86.19 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.32 Total: 1.78 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -0.69 Total: -0.53 kcal Total: -62.76 0.66 -62.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226411547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.972 kcal (2) G-P(sol) polarization free energy of solvation -62.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds