Wall clock time and date at job start Tue Mar 31 2020 12:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46845 * 2 1 4 4 H 1.08994 * 109.47227 * 306.03128 * 3 2 1 5 5 C 1.50708 * 109.46977 * 186.02875 * 3 2 1 6 6 H 1.07993 * 119.99866 * 243.90879 * 5 3 2 7 7 C 1.37875 * 119.99649 * 63.91351 * 5 3 2 8 8 N 1.31519 * 119.99910 * 197.16908 * 7 5 3 9 9 Si 1.86803 * 120.00192 * 17.16746 * 7 5 3 10 10 H 1.48501 * 109.46970 * 86.28891 * 9 7 5 11 11 H 1.48495 * 109.46962 * 206.28575 * 9 7 5 12 12 H 1.48493 * 109.47269 * 326.29045 * 9 7 5 13 13 N 1.46900 * 109.47114 * 66.03234 * 3 2 1 14 14 C 1.46903 * 110.99833 * 251.11943 * 13 3 2 15 15 C 1.50699 * 109.47300 * 184.27433 * 14 13 3 16 16 C 1.33401 * 125.19612 * 90.00108 * 15 14 13 17 17 C 1.38459 * 114.91290 * 180.02562 * 16 15 14 18 18 Br 1.89107 * 122.54655 * 179.97438 * 17 16 15 19 19 C 1.33436 * 114.90893 * 0.02562 * 17 16 15 20 20 C 1.50700 * 125.20106 * 179.97438 * 19 17 16 21 21 S 1.75878 * 109.59274 * 359.73546 * 19 17 16 22 22 H 1.09004 * 109.47186 * 55.85385 * 1 2 3 23 23 H 1.08996 * 109.47768 * 295.84549 * 1 2 3 24 24 H 1.09005 * 109.47164 * 175.84540 * 1 2 3 25 25 H 1.09001 * 109.46891 * 119.99169 * 2 1 3 26 26 H 1.08997 * 109.47961 * 239.99816 * 2 1 3 27 27 H 0.97001 * 119.99878 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99961 * 127.17423 * 13 3 2 29 29 H 1.08992 * 109.47467 * 304.27785 * 14 13 3 30 30 H 1.09007 * 109.46829 * 64.28224 * 14 13 3 31 31 H 1.08000 * 122.54441 * 0.02562 * 16 15 14 32 32 H 1.08996 * 109.47237 * 90.00363 * 20 19 17 33 33 H 1.09003 * 109.46815 * 209.99688 * 20 19 17 34 34 H 1.08995 * 109.47479 * 329.99758 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5911 1.9865 -0.8310 5 6 3.5395 1.4452 -0.1492 6 1 4.1607 1.8278 0.6470 7 6 4.1184 0.9592 -1.3024 8 7 5.3952 0.6441 -1.3149 9 14 3.0891 0.7482 -2.8469 10 1 3.0614 2.0268 -3.6018 11 1 3.6832 -0.3152 -3.6962 12 1 1.7045 0.3655 -2.4707 13 7 1.6726 2.0917 1.2656 14 6 0.6192 3.0940 1.0568 15 6 0.3433 3.8105 2.3535 16 6 0.9595 4.9197 2.7653 17 6 0.5389 5.3985 3.9945 18 35 1.2671 6.9553 4.7833 19 6 -0.4187 4.6774 4.5807 20 6 -1.0438 4.9862 5.9168 21 16 -0.8444 3.3154 3.5526 22 1 -0.3634 0.5768 -0.8505 23 1 -0.3634 0.4480 0.9248 24 1 -0.3634 -1.0250 -0.0745 25 1 1.8932 -0.5137 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 5.8023 0.3018 -2.1261 28 1 2.4805 2.5032 1.7086 29 1 0.9460 3.8138 0.3064 30 1 -0.2900 2.5996 0.7144 31 1 1.7282 5.4072 2.1840 32 1 -1.9102 5.6315 5.7720 33 1 -1.3578 4.0580 6.3941 34 1 -0.3156 5.4924 6.5504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227827669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:47 Heat of formation + Delta-G solvation = 24.299900 kcal Electronic energy + Delta-G solvation = -16396.061993 eV Core-core repulsion = 13694.422142 eV Total energy + Delta-G solvation = -2701.639851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.34616 -36.53610 -33.40887 -32.04135 -31.01224 -30.72761 -28.24035 -26.11174 -23.89128 -22.55607 -21.94355 -19.70185 -18.66805 -17.42964 -16.70294 -15.36379 -15.11354 -14.50945 -14.02403 -13.86704 -13.56127 -13.14946 -13.03314 -12.70864 -12.45190 -12.35479 -12.09689 -11.80642 -11.54344 -11.30241 -10.86560 -10.85803 -10.78151 -10.58476 -10.39055 -10.23507 -9.85422 -9.46731 -9.22912 -8.52339 -8.45036 -8.34868 -7.54101 -6.18736 -4.13959 0.85690 1.13936 1.77315 2.29203 2.48564 3.24038 3.33696 3.36217 4.35992 4.64550 4.90358 5.07213 5.12541 5.31766 5.32817 5.51923 5.59146 5.77060 5.91499 5.98646 6.04814 6.05380 6.17023 6.23634 6.33168 6.60739 6.73848 6.99691 7.02349 7.40290 7.57924 7.88877 8.25770 8.51704 8.89805 9.47313 10.94016 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.003698 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.028026 B = 7568.889649 C = 8500.289705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.192 3.808 4 H 0.009 0.991 5 C -0.540 4.540 6 H 0.075 0.925 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.674 5.674 14 C 0.124 3.876 15 C -0.147 4.147 16 C -0.127 4.127 17 C -0.099 4.099 18 Br -0.040 7.040 19 C -0.168 4.168 20 C -0.086 4.086 21 S 0.155 5.845 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.265 0.735 28 H 0.343 0.657 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 10.924 12.572 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.026 0.974 5 C -0.578 4.578 6 H 0.093 0.907 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.688 3.312 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.175 1.175 13 N -0.306 5.306 14 C -0.007 4.007 15 C -0.265 4.265 16 C -0.157 4.157 17 C -0.192 4.192 18 Br 0.044 6.956 19 C -0.288 4.288 20 C -0.145 4.145 21 S 0.419 5.581 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.869 9.715 13.019 22.022 hybrid contribution 1.102 1.363 -1.721 2.456 sum -13.767 11.077 11.298 20.974 Atomic orbital electron populations 1.21828 0.98626 0.99501 1.00483 1.21859 0.92685 0.99191 1.00968 1.19483 0.95472 0.90909 0.85830 0.97367 1.21281 0.89476 1.43376 1.03689 0.90662 1.24892 0.94756 0.93817 0.98833 1.70001 1.12205 1.41844 1.28233 0.87237 0.82239 0.78039 0.83642 1.20606 1.21349 1.17459 1.60745 1.13185 1.29984 1.26721 1.20565 0.97734 0.93304 0.89110 1.24583 1.01098 0.99224 1.01630 1.19869 1.02819 0.97469 0.95564 1.20542 1.02575 0.97676 0.98371 1.96628 1.84460 1.32751 1.81794 1.24484 1.02260 0.99841 1.02251 1.20438 1.00880 1.02459 0.90720 1.84298 1.37752 1.25179 1.10906 0.94441 0.92857 0.94588 0.92270 0.92969 0.92565 0.83793 0.93435 0.90489 0.83603 0.90361 0.90860 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.13 37.16 0.34 -2.30 16 2 C -0.11 -2.34 4.91 -26.73 -0.13 -2.47 16 3 C 0.19 4.33 1.73 -68.86 -0.12 4.21 16 4 H 0.01 0.20 6.25 -51.93 -0.32 -0.13 16 5 C -0.54 -14.58 9.02 -34.44 -0.31 -14.89 16 6 H 0.08 2.20 7.61 -52.49 -0.40 1.80 16 7 C 0.08 2.26 5.30 -17.82 -0.09 2.16 16 8 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 9 Si 0.86 20.66 25.83 -169.99 -4.39 16.27 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.25 -5.65 5.57 56.52 0.31 -5.33 16 13 N -0.67 -13.19 6.04 -109.22 -0.66 -13.85 16 14 C 0.12 2.04 5.68 -4.97 -0.03 2.01 16 15 C -0.15 -2.15 5.98 -36.00 -0.22 -2.37 16 16 C -0.13 -1.80 9.91 -41.19 -0.41 -2.21 16 17 C -0.10 -1.30 6.17 -41.18 -0.25 -1.56 16 18 Br -0.04 -0.46 32.71 -68.01 -2.22 -2.69 16 19 C -0.17 -2.01 6.51 -35.99 -0.23 -2.25 16 20 C -0.09 -0.77 10.02 36.01 0.36 -0.41 16 21 S 0.15 1.96 23.31 -107.50 -2.51 -0.55 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.91 7.10 -51.93 -0.37 0.54 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.05 1.19 4.95 -51.93 -0.26 0.93 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.34 7.01 7.77 -39.29 -0.31 6.70 16 29 H 0.05 0.80 8.04 -51.93 -0.42 0.38 16 30 H 0.08 1.22 6.90 -51.93 -0.36 0.86 16 31 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.70 7.31 -51.93 -0.38 0.32 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -28.30 309.02 -10.02 -38.32 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.57 Total: 3.56 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.10 Total: -20.07 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.11 Total: -39.50 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.39 Total: 16.27 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.51 Total: -0.55 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.22 Total: -2.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.30 -10.02 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227827669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.619 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds