Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46845 * 2 1 4 4 H 1.08994 * 109.47227 * 306.03128 * 3 2 1 5 5 C 1.50708 * 109.46977 * 186.02875 * 3 2 1 6 6 H 1.07993 * 119.99866 * 243.90879 * 5 3 2 7 7 C 1.37875 * 119.99649 * 63.91351 * 5 3 2 8 8 N 1.31519 * 119.99910 * 197.16908 * 7 5 3 9 9 Si 1.86803 * 120.00192 * 17.16746 * 7 5 3 10 10 H 1.48501 * 109.46970 * 86.28891 * 9 7 5 11 11 H 1.48495 * 109.46962 * 206.28575 * 9 7 5 12 12 H 1.48493 * 109.47269 * 326.29045 * 9 7 5 13 13 N 1.46900 * 109.47114 * 66.03234 * 3 2 1 14 14 C 1.46903 * 110.99833 * 251.11943 * 13 3 2 15 15 C 1.50699 * 109.47300 * 184.27433 * 14 13 3 16 16 C 1.33401 * 125.19612 * 90.00108 * 15 14 13 17 17 C 1.38459 * 114.91290 * 180.02562 * 16 15 14 18 18 Br 1.89107 * 122.54655 * 179.97438 * 17 16 15 19 19 C 1.33436 * 114.90893 * 0.02562 * 17 16 15 20 20 C 1.50700 * 125.20106 * 179.97438 * 19 17 16 21 21 S 1.75878 * 109.59274 * 359.73546 * 19 17 16 22 22 H 1.09004 * 109.47186 * 55.85385 * 1 2 3 23 23 H 1.08996 * 109.47768 * 295.84549 * 1 2 3 24 24 H 1.09005 * 109.47164 * 175.84540 * 1 2 3 25 25 H 1.09001 * 109.46891 * 119.99169 * 2 1 3 26 26 H 1.08997 * 109.47961 * 239.99816 * 2 1 3 27 27 H 0.97001 * 119.99878 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99961 * 127.17423 * 13 3 2 29 29 H 1.08992 * 109.47467 * 304.27785 * 14 13 3 30 30 H 1.09007 * 109.46829 * 64.28224 * 14 13 3 31 31 H 1.08000 * 122.54441 * 0.02562 * 16 15 14 32 32 H 1.08996 * 109.47237 * 90.00363 * 20 19 17 33 33 H 1.09003 * 109.46815 * 209.99688 * 20 19 17 34 34 H 1.08995 * 109.47479 * 329.99758 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5911 1.9865 -0.8310 5 6 3.5395 1.4452 -0.1492 6 1 4.1607 1.8278 0.6470 7 6 4.1184 0.9592 -1.3024 8 7 5.3952 0.6441 -1.3149 9 14 3.0891 0.7482 -2.8469 10 1 3.0614 2.0268 -3.6018 11 1 3.6832 -0.3152 -3.6962 12 1 1.7045 0.3655 -2.4707 13 7 1.6726 2.0917 1.2656 14 6 0.6192 3.0940 1.0568 15 6 0.3433 3.8105 2.3535 16 6 0.9595 4.9197 2.7653 17 6 0.5389 5.3985 3.9945 18 35 1.2671 6.9553 4.7833 19 6 -0.4187 4.6774 4.5807 20 6 -1.0438 4.9862 5.9168 21 16 -0.8444 3.3154 3.5526 22 1 -0.3634 0.5768 -0.8505 23 1 -0.3634 0.4480 0.9248 24 1 -0.3634 -1.0250 -0.0745 25 1 1.8932 -0.5137 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 5.8023 0.3018 -2.1261 28 1 2.4805 2.5032 1.7086 29 1 0.9460 3.8138 0.3064 30 1 -0.2900 2.5996 0.7144 31 1 1.7282 5.4072 2.1840 32 1 -1.9102 5.6315 5.7720 33 1 -1.3578 4.0580 6.3941 34 1 -0.3156 5.4924 6.5504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227827669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = 7.516334 kcal Electronic energy + Delta-G solvation = -16396.789783 eV Core-core repulsion = 13694.422142 eV Total energy + Delta-G solvation = -2702.367641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44734 -38.10470 -34.91369 -33.84451 -32.28316 -31.66591 -29.77350 -27.56721 -25.09360 -24.19023 -23.12842 -21.44758 -19.76166 -19.11621 -18.05861 -17.07646 -16.28923 -15.92265 -15.53543 -15.09612 -14.88744 -14.71183 -14.22849 -14.08098 -13.81241 -13.54497 -13.37012 -13.17592 -12.85659 -12.69347 -12.58084 -12.42794 -12.05010 -11.82183 -11.66119 -11.60620 -11.27377 -11.18142 -11.11665 -10.57227 -9.57410 -9.34073 -9.11851 -8.34284 -6.33479 -0.16668 0.17145 0.72321 1.30349 1.34101 1.37628 1.41574 1.47213 2.33881 3.00113 3.54424 3.76800 3.95715 4.20196 4.33533 4.48857 4.53868 4.62072 4.65713 4.68163 4.69345 4.88434 4.91367 5.02644 5.13258 5.22685 5.26811 5.31540 5.40889 5.54664 5.79667 5.99336 6.42144 6.60915 6.81729 7.31880 8.82122 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.003698 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.028026 B = 7568.889649 C = 8500.289705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.197 3.803 4 H 0.011 0.989 5 C -0.544 4.544 6 H 0.035 0.965 7 C 0.025 3.975 8 N -0.937 5.937 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.224 1.224 13 N -0.672 5.672 14 C 0.128 3.872 15 C -0.173 4.173 16 C -0.127 4.127 17 C -0.124 4.124 18 Br -0.029 7.029 19 C -0.155 4.155 20 C -0.089 4.089 21 S 0.180 5.820 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.266 0.734 28 H 0.335 0.665 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 11.116 13.014 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.088 3.912 4 H 0.029 0.971 5 C -0.582 4.582 6 H 0.053 0.947 7 C -0.174 4.174 8 N -0.576 5.576 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.146 1.146 13 N -0.303 5.303 14 C -0.002 4.002 15 C -0.292 4.292 16 C -0.158 4.158 17 C -0.215 4.215 18 Br 0.055 6.945 19 C -0.276 4.276 20 C -0.148 4.148 21 S 0.444 5.556 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.157 0.843 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.809 9.915 13.476 24.435 hybrid contribution 2.044 1.377 -1.697 2.993 sum -15.765 11.292 11.778 22.688 Atomic orbital electron populations 1.21729 0.95278 1.01187 1.01351 1.21773 0.95642 0.97656 0.99712 1.19354 0.92344 0.92245 0.87259 0.97086 1.21606 0.91873 1.42214 1.02501 0.94654 1.25747 0.95822 0.93662 1.02193 1.70137 1.14398 1.43875 1.29208 0.86223 0.81810 0.78000 0.79152 1.20188 1.21422 1.14644 1.60729 1.13334 1.31287 1.24969 1.20507 0.96819 0.92603 0.90282 1.24384 1.03008 0.99861 1.01945 1.19949 1.02421 0.97400 0.96070 1.20611 1.03657 0.98837 0.98414 1.96625 1.84452 1.32014 1.81423 1.24941 1.01077 0.98672 1.02900 1.20610 1.01423 1.03724 0.89019 1.84136 1.36460 1.25058 1.09929 0.93580 0.91986 0.92532 0.93639 0.94257 0.92524 0.84788 0.94056 0.89340 0.84325 0.88546 0.89280 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.13 71.98 0.66 -3.85 16 2 C -0.11 -4.56 4.91 30.59 0.15 -4.41 16 3 C 0.20 8.83 1.73 44.17 0.08 8.90 16 4 H 0.01 0.51 6.25 -2.39 -0.01 0.49 16 5 C -0.54 -30.17 9.02 25.60 0.23 -29.94 16 6 H 0.04 2.18 7.61 -2.91 -0.02 2.16 16 7 C 0.03 1.42 5.30 84.65 0.45 1.87 16 8 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 9 Si 0.92 42.53 25.83 68.60 1.77 44.30 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.22 -9.26 5.57 99.48 0.55 -8.70 16 13 N -0.67 -26.18 6.04 -499.45 -3.02 -29.19 16 14 C 0.13 4.09 5.68 85.56 0.49 4.58 16 15 C -0.17 -4.91 5.98 24.59 0.15 -4.77 16 16 C -0.13 -3.56 9.91 21.23 0.21 -3.35 16 17 C -0.12 -3.08 6.17 21.23 0.13 -2.95 16 18 Br -0.03 -0.63 32.71 -20.37 -0.67 -1.30 16 19 C -0.16 -3.37 6.51 24.60 0.16 -3.21 16 20 C -0.09 -1.32 10.02 71.24 0.71 -0.61 16 21 S 0.18 4.16 23.31 -56.49 -1.32 2.84 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.91 7.10 -2.39 -0.02 1.89 16 24 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.72 4.95 -2.39 -0.01 1.71 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.33 14.04 7.77 -89.69 -0.70 13.34 16 29 H 0.04 1.36 8.04 -2.39 -0.02 1.35 16 30 H 0.09 2.60 6.90 -2.38 -0.02 2.58 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.24 7.31 -2.39 -0.02 1.22 16 Total: -1.00 -61.78 309.02 0.74 -61.03 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.26 Total: 17.43 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.41 Total: -37.71 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.72 Total: -86.59 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.77 Total: 44.30 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -0.67 Total: -1.30 kcal Total: -61.78 0.74 -61.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227827669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.549 kcal (2) G-P(sol) polarization free energy of solvation -61.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds