Wall clock time and date at job start Tue Mar 31 2020 11:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36885 * 119.99892 * 2 1 4 4 H 1.08004 * 119.99876 * 162.01745 * 3 2 1 5 5 C 1.39042 * 119.99872 * 342.01830 * 3 2 1 6 6 N 1.31369 * 119.99817 * 343.00201 * 5 3 2 7 7 Si 1.86802 * 119.99784 * 162.99925 * 5 3 2 8 8 H 1.48494 * 109.47293 * 60.00008 * 7 5 3 9 9 H 1.48499 * 109.46836 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47009 * 300.00066 * 7 5 3 11 11 C 1.34777 * 120.00065 * 179.97438 * 2 1 3 12 12 O 1.21600 * 119.99610 * 184.42125 * 11 2 1 13 13 C 1.47667 * 120.00077 * 4.42287 * 11 2 1 14 14 C 1.39702 * 120.13217 * 31.94134 * 13 11 2 15 15 C 1.37865 * 119.87634 * 180.02562 * 14 13 11 16 16 C 1.38532 * 120.15094 * 0.02562 * 15 14 13 17 17 Cl 1.73595 * 119.86447 * 180.27280 * 16 15 14 18 18 C 1.38590 * 120.26885 * 359.97438 * 16 15 14 19 19 Br 1.89099 * 119.93998 * 180.02562 * 18 16 15 20 20 C 1.37984 * 120.11881 * 0.02562 * 18 16 15 21 21 H 1.08999 * 109.47309 * 209.91622 * 1 2 3 22 22 H 1.08994 * 109.47367 * 329.91566 * 1 2 3 23 23 H 1.09006 * 109.47392 * 89.91794 * 1 2 3 24 24 H 0.97002 * 119.99418 * 179.97438 * 6 5 3 25 25 H 1.07990 * 120.06195 * 0.02562 * 14 13 11 26 26 H 1.07997 * 119.92198 * 180.02562 * 15 14 13 27 27 H 1.07997 * 120.07798 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.1898 1.2083 0.2888 5 6 1.5050 2.3602 -0.3717 6 7 0.3704 2.3064 -1.0316 7 14 2.2528 4.0147 0.0673 8 1 3.5968 4.1309 -0.5534 9 1 1.3779 5.1030 -0.4380 10 1 2.3778 4.1255 1.5429 11 6 2.1388 -1.1672 0.0005 12 8 3.3521 -1.1686 0.0817 13 6 1.4038 -2.4442 -0.0975 14 6 0.2108 -2.5129 -0.8212 15 6 -0.4714 -3.7077 -0.9088 16 6 0.0233 -4.8391 -0.2808 17 17 -0.8381 -6.3414 -0.4019 18 6 1.2062 -4.7779 0.4387 19 35 1.8733 -6.3281 1.2918 20 6 1.8980 -3.5878 0.5337 21 1 -0.3634 -0.8907 0.5125 22 1 -0.3634 0.8892 0.5151 23 1 -0.3634 0.0015 -1.0277 24 1 -0.0793 3.1260 -1.2906 25 1 -0.1763 -1.6318 -1.3110 26 1 -1.3935 -3.7618 -1.4684 27 1 2.8195 -3.5407 1.0949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228987964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:27 Heat of formation + Delta-G solvation = 3.698305 kcal Electronic energy + Delta-G solvation = -16139.097445 eV Core-core repulsion = 13162.854347 eV Total energy + Delta-G solvation = -2976.243098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.75913 -37.87116 -36.36692 -34.94981 -32.61444 -31.70967 -30.67007 -29.20294 -26.51136 -25.18256 -22.93017 -22.34852 -19.59713 -17.32884 -16.80647 -16.41610 -15.50601 -15.10787 -14.32517 -14.17547 -14.05423 -13.68832 -13.31334 -13.04536 -12.13031 -12.05308 -11.64063 -11.57538 -11.44234 -11.27206 -11.03719 -10.85666 -10.63930 -10.48721 -10.37585 -10.10576 -9.18550 -8.84217 -8.70196 -8.44306 -7.94369 -6.57514 -4.01319 0.87568 1.22001 1.51178 2.11012 3.05269 3.14854 3.18635 3.31909 3.96395 4.11108 4.58997 4.76465 4.94947 5.16813 5.33607 5.36689 5.51747 5.84513 6.00028 6.16001 6.19052 6.50257 6.63133 6.69913 6.98975 7.36459 7.89380 8.26548 8.96783 9.17684 9.76046 10.45943 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.003896 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.033327 B = 7184.710309 C = 7959.302295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.423 5.423 3 C -0.305 4.305 4 H 0.107 0.893 5 C 0.033 3.967 6 N -0.869 5.869 7 Si 0.930 3.070 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.271 1.271 11 C 0.465 3.535 12 O -0.586 6.586 13 C -0.080 4.080 14 C -0.081 4.081 15 C -0.111 4.111 16 C -0.015 4.015 17 Cl -0.060 7.060 18 C -0.093 4.093 19 Br -0.040 7.040 20 C -0.042 4.042 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.273 0.727 25 H 0.156 0.844 26 H 0.142 0.858 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -13.684 2.115 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.139 5.139 3 C -0.433 4.433 4 H 0.124 0.876 5 C -0.172 4.172 6 N -0.506 5.506 7 Si 0.756 3.244 8 H -0.195 1.195 9 H -0.207 1.207 10 H -0.196 1.196 11 C 0.255 3.745 12 O -0.472 6.472 13 C -0.085 4.085 14 C -0.100 4.100 15 C -0.131 4.131 16 C -0.045 4.045 17 Cl -0.031 7.031 18 C -0.174 4.174 19 Br 0.046 6.954 20 C -0.063 4.063 21 H 0.055 0.945 22 H 0.095 0.905 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.174 0.826 26 H 0.160 0.840 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.381 -14.196 2.386 15.047 hybrid contribution -0.161 1.036 -0.146 1.059 sum -4.542 -13.160 2.240 14.100 Atomic orbital electron populations 1.21942 0.81007 1.00128 1.01239 1.43553 1.05734 1.04833 1.59740 1.19769 0.97695 0.82805 1.43048 0.87558 1.25389 0.96416 1.00302 0.95127 1.69995 1.17292 1.29639 1.33705 0.85920 0.79081 0.80098 0.79274 1.19489 1.20745 1.19633 1.17697 0.87210 0.82802 0.86820 1.90634 1.13197 1.86489 1.56901 1.20467 0.94928 0.95491 0.97649 1.22092 0.93321 0.98200 0.96397 1.20978 1.01192 0.90623 1.00279 1.20832 0.93690 0.88582 1.01351 1.98363 1.76102 1.31669 1.96948 1.21571 0.97491 0.93991 1.04324 1.96679 1.86641 1.33830 1.78283 1.21165 0.98984 0.89210 0.96936 0.94498 0.90479 0.91978 0.91665 0.82622 0.84035 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 7.06 59.84 0.42 2.49 15 2 N -0.42 -10.36 3.02 -123.34 -0.37 -10.73 15 3 C -0.31 -8.11 9.36 -15.00 -0.14 -8.26 15 4 H 0.11 2.97 7.33 -52.48 -0.38 2.58 15 5 C 0.03 0.81 5.00 -17.45 -0.09 0.73 15 6 N -0.87 -21.45 10.68 55.50 0.59 -20.86 15 7 Si 0.93 19.56 29.59 -169.99 -5.03 14.54 15 8 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 9 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 11 C 0.47 11.19 7.36 -12.41 -0.09 11.10 15 12 O -0.59 -16.08 16.40 5.28 0.09 -15.99 15 13 C -0.08 -1.54 5.28 -104.97 -0.55 -2.10 15 14 C -0.08 -1.30 7.62 -39.17 -0.30 -1.60 15 15 C -0.11 -1.53 9.81 -39.61 -0.39 -1.92 15 16 C -0.02 -0.22 6.33 -39.34 -0.25 -0.46 15 17 Cl -0.06 -0.75 27.72 -51.86 -1.44 -2.18 15 18 C -0.09 -1.43 6.22 -39.54 -0.25 -1.68 15 19 Br -0.04 -0.53 32.51 -68.01 -2.21 -2.74 15 20 C -0.04 -0.73 9.34 -39.14 -0.37 -1.10 15 21 H 0.04 0.65 5.88 -51.93 -0.31 0.35 15 22 H 0.08 1.69 6.75 -51.93 -0.35 1.34 15 23 H 0.06 1.27 6.34 -51.93 -0.33 0.94 15 24 H 0.27 6.37 8.31 -40.82 -0.34 6.03 15 25 H 0.16 2.48 4.99 -52.49 -0.26 2.22 15 26 H 0.14 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.15 2.58 7.95 -52.49 -0.42 2.16 15 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -28.02 270.22 -7.90 -35.92 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -1.61 Total: 0.78 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.00 Total: -2.80 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.22 Total: -31.59 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.09 Total: -15.99 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.44 Total: -2.18 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.21 Total: -2.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.02 -7.90 -35.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228987964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.620 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds